SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4738

Length: 3620 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4738
CCTATCTGAATGAAGTGGCTACTGCTTCTTCTTATAAAAGATTTTCCCTTATTTTAGTTTTCGAGCGATACCTAATTAAAAACTCACAGGCAAGCGAGTCTGCTATGCATTGTCTTTGATTTGATTTCTGGGAATGGCGGGGAATGAGTGGATGAACGGTTACTTGGAGGCTATTCTCGATGGAGGAGGAATCAGTGATGATATTGACTACACTCGTCAGACGAAGGAGCATTCTGTTAAGTCAGGGGTTACTGTGATTCCCCAATTGGGGGTCTTCAACCCGGCCCGGTATTTCATTGACGAGGTCGTCAATGCCACCGACGAGACTGATATTCACCACTTCTGGGTCAAGGTCACTGCTACCAAAAACCCAGAGGAGCGGAACACTAGGCTGGAGAATCTCTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAGAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAATTGCGCCAAGAACGCGAACGAGGCCGGAGGGATGTCACGGAAGATATGTCAGAGGACTTGTCCGAAGGCGAGAAGTTAGGAGGAGACGGTCAAGGGTTGAAGTTATCTGAAAGCCATTACAATCTCGAGCTCCTTACCGAGCAATCGCTTAAAGAGAAACGACTCTATGTTATCATGATCAGTTTGCATGGCCTAGTCCGAGGGGAGAATATGGAACTTGGCCGTGATTCTGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAAAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACGCGTCAGATCTGTTCTCCTGACTTGGATTCTAGCTATGGAGAGCCAACTGAAATGCTGACTTCTGATCAGGATGATGACATTCTAGAGAGTGGGGGGGCATACATAGTTCGAATTCCCTGTGGATGCAAAGAAAAGTATATTCAGAAAGAATTGTTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCACTGGGTCATATTCTTAATATTTCCAAAGCATTGGGAGATCTGATTGGAGAAGTCACACCTGTATGGCCTCATGTAATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTGAACGTTCCAATGGTTTTGACAGGCCATTCTCTAGGCCGAAATAAACTAGAACAATTATTGAAACAAGGATTGCATTCCAAGGAAGATATCAATGCAACATACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCCTTGATTCCGCTGAGCTTGTGGTGACAAGTACAAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGTTTTGATTTGGAACTGAATAGAAAGCTCAGACAGCGAGCAAAGCGTGGTGTCCATTGTTATGGTCGTTACATGCCTCGAATGTCGGTTATACCTCCTGGAATGGACTTCAGCAATGTTGTAGTGCATGATGAGAATTCAGATAATGATTTAGATACTGATTCTGTTCAATTGCCCGGGTCTCCTAAATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCGAAGCCCATTATTTTGGCTCTTGCTCGACCTGATCCCAAGAAGAACATGGCAACCTTAGTCAAGGCTTTTGGTGAATGTATCAAATTGAGGAAGCTGGCAAACTTGATGTTGATCATGGGCAATCGAGATGATATTGATCAAATGCCTGCAGCAAGTGCCAATGTGTTGACCACTGTCCTGAAGCTTATTGACAAATATGATCTATATGGAGAAGTGGCATATCCTAAACATCACAAACAATCAGAAGTTGCTGATATATATAGGATTGCAGCAAAGACTAAGGGTGTTTTTATCAATCCGGCCCTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCCGCTGCACATGGATTACCTATGGTTGCAACAAAGAATGGAGGACCTGTAGATATTCAGCGGACGTTGAATAATGGTTTGTTGGTAGATCCCCATGACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGTTGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGCAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATCTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGAAAATGACCAAAATGAAAATATGGATTCCGAATCAGACAGTGGTTCATTCAAGGATGCCCCTGATACATCCCTTCGTCTCTCATTAGATGCAGATAGGCCTTCTCGCTCTAGTTCACTTAATAGCCCCTTTGATCTTGATAAACTTCGTGAAAATGAAGAGAACGTCGGAGGTATTTCTGAACACATTAGGATGATCATAGGAAAGACTAAGGATAATCAATCTAAATTGCGGGAGACAAATGACGTGAATTCACAGGAAAAACGAAGTGTAGAGCACAGTAATAGCTTAGGTTCTTCAGGGAAACAACTTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAGTGGATTGCTATGATGCTTCTGGAGAGCCCCTTCTTAGTAGACAAGCTATTATCATCCAAGAGATTATGAATGCAGTTTGTTTTGCTGGCAACTTTTCATCTCCTGGATTCATTTTATCTACTGCATTAACAGTTCCAGAAACAATTTCCATGCTTCAGTCTATCGGAATCAAAGTATCTGCGTTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTTTTATATACAGCTGGTGACAATCCAGATTCACCCATATATCCAGATCCAGACTATGATTCTCATATTGATTATCGCTGGGGTGCAGAAGGTCTCAGAAAAAGCATGAAAAAATTGAGAGGCCCAGAGAATTCTCGGTTCCTAGTGGAAGATGCTGAAGCATCTAACTTCCATTGCTTGGCATATCAAGTCAAGAACATATCCACTGCTCCCAAAGCAGATGAGTTGAGGCGGCAACTAAGAATGAGAGGTTTGAGATGCCATGTGATTTACACTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTATTTATATGTTCGATGGGGCTTGGATATAGCCAATATGTATGTCTTTCTAGGGGAAAAAGGAGATACGGACTATGAAGAGTTGATTGGAGGAATGCACAAAACATTGATACTGAAAGGGATCGTCGTTGATGGAAGTGAAAAGATGCTGAGGAGTCCTACCAGTTATGGAAGTGGAGATGTTTTTCCTTCGGAAAGTCCAAATATAGTGTCAGTTACTGTAAGTGATGATAATGAAGGATTCAACAGCCAACAAATAATTGCATCTCTACATTGGTTTGAGGGATCTGCATCCTAGCCGTTGCCTTTTTACTAAAATAAAAAGTTTCTAGCTAATTTTAGATGAAAAATTCCTAGCCAATTTTAGATGAGAACTACTGATAAAATCTTATAAAAGTTGTAAGAACCCAATCAGTTTGTGAAGGATTGGAGCTGTCAATGCCTCACAAGAATGTACAATTGAAGAGTATTTCAAAAATTCTCTTTCACTCTTCAACAGTCTACTTTTGTATGTAAAGCTTGGAATAAGTGTCTCATTTATATGAATAATACGTTTTTTCCTGCGCTTATTT

Ace file of the UniGene sp_v1.1_unigene4738

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose-phosphate synthase isoform B n=1 Tax=Nicotiana tabacum RepID=Q3HLN2_TOBAC	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	sucrose phosphate synthase	-	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: your sequence is longer than subject: 1071 - 713

Fln protein: MAGNEWMNGYLEAILDGGGISDDIDYTRQTKEHSVKSGVTVIPQLGVFNPARYFIDEVVNATDETDIHHFWVKVTATKNPEERNTRLENLCWRIWHISRRKKKGKLEQSKRLQKLRQERERGRRDVTEDMSEDLSEGEKLGGDGQGLKLSESHYNLELLTEQSLKEKRLYVIMISLHGLVRGENMELGRDSDTGGQVKYVVEFAKALAKMPEVYRVDLLTRQICSPDLDSSYGEPTEMLTSDQDDDILESGGAYIVRIPCGCKEKYIQKELLWPYIPEFVDGALGHILNISKALGDLIGEVTPVWPHVIHGHYADAGDAACLLSGALNVPMVLTGHSLGRNKLEQLLKQGLHSKEDINATYKIMRRIEAEELCLDSAELVVTSTRQEIEEQWGLYDGFDLELNRKLRQRAKRGVHCYGRYMPRMSVIPPGMDFSNVVVHDENSDNDLDTDSVQLPGSPKWGEIPRFLNNPSKPIILALARPDPKKNMATLVKAFGECIKLRKLANLMLIMGNRDDIDQMPAASANVLTTVLKLIDKYDLYGEVAYPKHHKQSEVADIYRIAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIQRTLNNGLLVDPHDDKEIAAALYRLVVDKNLWAECRQNGLQNIHLYSWPQHCKIYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKLRENEENVGGISEHIRMIIGKTKDNQSKLRETNDVNSQEKRSVEHSNSLGSSGKQLLRRRKRLFVIAVDCYDASGEPLLSRQAIIIQEIMNAVCFAGNFSSPGFILSTALTVPETISMLQSIGIKVSAFDALICSSGSQLLYTAGDNPDSPIYPDPDYDSHIDYRWGAEGLRKSMKKLRGPENSRFLVEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGIVVDGSEKMLRSPTSYGSGDVFPSESPNIVSVTVSDDNEGFNSQQIIASLHWFEGSAS*

Protein Length: 1072

Fln nts: CCTATCTGAATGAAGTGGCTACTGCTTCTTCTTATAAAAGATTTTCCCTTATTTTAGTTTTCGAGCGATACCTAATTAAAAACTCACAGGCAAGCGAGTCTGCTATGCATTGTCTTTGATTTGATTTCTGGGA_-_ATGGCGGGGAATGAGTGGATGAACGGTTACTTGGAGGCTATTCTCGATGGAGGAGGAATCAGTGATGATATTGACTACACTCGTCAGACGAAGGAGCATTCTGTTAAGTCAGGGGTTACTGTGATTCCCCAATTGGGGGTCTTCAACCCGGCCCGGTATTTCATTGACGAGGTCGTCAATGCCACCGACGAGACTGATATTCACCACTTCTGGGTCAAGGTCACTGCTACCAAAAACCCAGAGGAGCGGAACACTAGGCTGGAGAATCTCTGCTGGAGAATATGGCACATCAGCCGCAGGAAGAAGAAGGGGAAGTTGGAGCAATCCAAAAGGCTGCAGAAATTGCGCCAAGAACGCGAACGAGGCCGGAGGGATGTCACGGAAGATATGTCAGAGGACTTGTCCGAAGGCGAGAAGTTAGGAGGAGACGGTCAAGGGTTGAAGTTATCTGAAAGCCATTACAATCTCGAGCTCCTTACCGAGCAATCGCTTAAAGAGAAACGACTCTATGTTATCATGATCAGTTTGCATGGCCTAGTCCGAGGGGAGAATATGGAACTTGGCCGTGATTCTGATACAGGTGGACAGGTGAAATATGTTGTAGAGTTTGCAAAAGCACTTGCAAAAATGCCAGAAGTGTATAGAGTGGACCTGCTAACGCGTCAGATCTGTTCTCCTGACTTGGATTCTAGCTATGGAGAGCCAACTGAAATGCTGACTTCTGATCAGGATGATGACATTCTAGAGAGTGGGGGGGCATACATAGTTCGAATTCCCTGTGGATGCAAAGAAAAGTATATTCAGAAAGAATTGTTGTGGCCATACATTCCAGAGTTTGTAGATGGAGCACTGGGTCATATTCTTAATATTTCCAAAGCATTGGGAGATCTGATTGGAGAAGTCACACCTGTATGGCCTCATGTAATCCATGGCCACTATGCAGATGCAGGGGATGCTGCTTGCCTTCTTTCTGGTGCTCTGAACGTTCCAATGGTTTTGACAGGCCATTCTCTAGGCCGAAATAAACTAGAACAATTATTGAAACAAGGATTGCATTCCAAGGAAGATATCAATGCAACATACAAGATCATGCGTAGGATTGAAGCTGAAGAATTGTGCCTTGATTCCGCTGAGCTTGTGGTGACAAGTACAAGGCAAGAAATTGAAGAACAATGGGGCCTGTATGATGGTTTTGATTTGGAACTGAATAGAAAGCTCAGACAGCGAGCAAAGCGTGGTGTCCATTGTTATGGTCGTTACATGCCTCGAATGTCGGTTATACCTCCTGGAATGGACTTCAGCAATGTTGTAGTGCATGATGAGAATTCAGATAATGATTTAGATACTGATTCTGTTCAATTGCCCGGGTCTCCTAAATGGGGTGAGATCCCACGGTTTTTGAACAATCCTTCGAAGCCCATTATTTTGGCTCTTGCTCGACCTGATCCCAAGAAGAACATGGCAACCTTAGTCAAGGCTTTTGGTGAATGTATCAAATTGAGGAAGCTGGCAAACTTGATGTTGATCATGGGCAATCGAGATGATATTGATCAAATGCCTGCAGCAAGTGCCAATGTGTTGACCACTGTCCTGAAGCTTATTGACAAATATGATCTATATGGAGAAGTGGCATATCCTAAACATCACAAACAATCAGAAGTTGCTGATATATATAGGATTGCAGCAAAGACTAAGGGTGTTTTTATCAATCCGGCCCTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCCGCTGCACATGGATTACCTATGGTTGCAACAAAGAATGGAGGACCTGTAGATATTCAGCGGACGTTGAATAATGGTTTGTTGGTAGATCCCCATGACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGTTGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGCAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATCTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGAAAATGACCAAAATGAAAATATGGATTCCGAATCAGACAGTGGTTCATTCAAGGATGCCCCTGATACATCCCTTCGTCTCTCATTAGATGCAGATAGGCCTTCTCGCTCTAGTTCACTTAATAGCCCCTTTGATCTTGATAAACTTCGTGAAAATGAAGAGAACGTCGGAGGTATTTCTGAACACATTAGGATGATCATAGGAAAGACTAAGGATAATCAATCTAAATTGCGGGAGACAAATGACGTGAATTCACAGGAAAAACGAAGTGTAGAGCACAGTAATAGCTTAGGTTCTTCAGGGAAACAACTTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAGTGGATTGCTATGATGCTTCTGGAGAGCCCCTTCTTAGTAGACAAGCTATTATCATCCAAGAGATTATGAATGCAGTTTGTTTTGCTGGCAACTTTTCATCTCCTGGATTCATTTTATCTACTGCATTAACAGTTCCAGAAACAATTTCCATGCTTCAGTCTATCGGAATCAAAGTATCTGCGTTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTTTTATATACAGCTGGTGACAATCCAGATTCACCCATATATCCAGATCCAGACTATGATTCTCATATTGATTATCGCTGGGGTGCAGAAGGTCTCAGAAAAAGCATGAAAAAATTGAGAGGCCCAGAGAATTCTCGGTTCCTAGTGGAAGATGCTGAAGCATCTAACTTCCATTGCTTGGCATATCAAGTCAAGAACATATCCACTGCTCCCAAAGCAGATGAGTTGAGGCGGCAACTAAGAATGAGAGGTTTGAGATGCCATGTGATTTACACTCAAAATTGTTCCCGGCTGCGTGTGCTGCCTCTTCATGCTTCAAGATCTCAAGCTTTAAGGTATTTATATGTTCGATGGGGCTTGGATATAGCCAATATGTATGTCTTTCTAGGGGAAAAAGGAGATACGGACTATGAAGAGTTGATTGGAGGAATGCACAAAACATTGATACTGAAAGGGATCGTCGTTGATGGAAGTGAAAAGATGCTGAGGAGTCCTACCAGTTATGGAAGTGGAGATGTTTTTCCTTCGGAAAGTCCAAATATAGTGTCAGTTACTGTAAGTGATGATAATGAAGGATTCAACAGCCAACAAATAATTGCATCTCTACATTGGTTTGAGGGATCTGCATCCTAG___CCGTTGCCTTTTTACTAAAATAAAAAGTTTCTAGCTAATTTTAGATGAAAAATTCCTAGCCAATTTTAGATGAGAACTACTGATAAAATCTTATAAAAGTTGTAAGAACCCAATCAGTTTGTGAAGGATTGGAGCTGTCAATGCCTCACAAGAATGTACAATTGAAGAGTATTTCAAAAATTCTCTTTCACTCTTCAACAGTCTACTTTTGTATGTAAAGCTTGGAATAAGTGTCTCATTTATATGAATAATACGTTTTTTCCTGCGCTTATTT

Fln Alignment:

sp_v1.1_unigene4738___MRRIEAEELCLDSAELVVTSTRQEIEEQWGLYDGFDLELNRKLRQRAKRGVHCYGRYMPRMSVIPPGMDFSNVVVHDEN---SDNDL----DTDSVQLPGS--PKWGEIPRFLNNPSKPIILALARPDPKKNMATLVKAFGECIKLRKLANLMLIMGNRDDIDQMPAASANVLTTVLKLIDKYDLYGEVAYPKHHKQSEVADIYRIAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIQRTLNNGLLVDPHDDKEIAAALYRLVVDKNLWAECRQNGLQNIHLYSWPQHCKIYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKLRENEENVGGISEHIRMIIGKTK--DNQSKLRETNDVNSQEKRSVEHSNSLGSSGKQLLRRRKRLFVIAVDCYDASGEPLLSRQAIIIQEIMNAV---CFAGNFSSPGFILSTALTVPETISMLQSIGIKVSAFDALICSSGSQLLYTA-----GXXXXXXXXXXXXXXXXXXXRWGAEGLRKSMKKLRGPE------NSRFLVEDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGIVVDGSEKMLRSPTSYGSGDVFPSESPNIVSVTVSDDNEGFNSQQII
B8LLM0______________MRRIEAEELSLDAAELVITSTKQEIVEQWGLYDGFDVRLEKILRARTKRKVSCHGRYMPRMVVIPPGMDFSNVVVTEQEPAESDGDLAALINGDGNLSPRALPPIWSEVMRFFTNRHKPMILALSRPDPKKNLTTLVKAFGECRPLKELANLTLVMGNRDDIDGMSGGNGAVLTTVLKLIDKYDLYGQVAYPKHHRQSDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHTTLNNGLLVDPHDQKAIANALLELVADKNLWNECRRNGLRNIHLFSWPEHCRKYLSRVALCRMRHPQWQTDTLMDTTMEEESMGDSLKDVQDMSLRLSVDGDKYSVYGSLDNSAEVDKLLAAKGD-PELYNQVKRVLDKLKRAPPSSTTEETEPKPDVNEPRAPANNVIASNKYPALRKKRKLFVIAVDCYDDNGN-VSPRMLEIIQEIFKAVRSDATAARFA--GLVLSTALTVDETLGMLNSGNVQPHEFDALICSSGSELYYPAIPAYPDDGSDKKLWPDPDYDSHIDYRWGGEGLRKTVHILTAPERDGQEKQERVIFENAEHSNAHCLAYVVKDSPRVRKVDELRQRLRMRGLRCHLMFCRNSTQLHVIQLLASRSQALRYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEKLLRGSGSYQREDIVPSESPNIVSI-----EDGYNCEAIL

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
633		25	75		0.996473
776		80	20		0.995493
777	80		20		0.995493
1392		11		88	0.923564
1491	50	50			1.0
1527	25		75		0.996473
1786	77	22			0.999999
1788	66		16	16	0.999991
1790		83	16		0.999991
1791	66		33		1.0
1792		83		16	0.999991
1793	66		16	16	0.999991
1794	83		16		0.999991
1795	66	16		16	0.999991
1797	83			16	0.999991
1798	66	16		16	0.999991
1799			16	83	0.999991
1801	83			16	0.999991
1803	83			16	0.999991
1805		16	83		0.999991
1807		16		83	0.999991
1808	16		83		0.999991
1809	16	83			0.999991
1828	86		13		0.999973
1829			86	13	0.999973
1831	86		13		0.999973
1832	86			13	0.999973
1837		14		85	0.999981
1838	85			14	0.999981
1839	85			14	0.999981
1842		14	85		0.999981
1846		16		83	0.999991
1847	16			83	0.999991
1848		16		83	0.999991
1850	83	16			0.999991
1851	16			83	0.999991
3019	10		90		0.90298
3040			20	80	0.999996
3043	80		20		0.999996
3044	80			20	0.999996
3047		20		80	0.999996
3048		90		10	0.90298
3050		77		22	0.999999
3051	77		22		0.999999
3056			22	77	0.999999
3058	77	22			0.999999
3060		25	75		1.0
3061			75	25	1.0
3062		25		75	1.0
3130	66		33		1.0
3143			14	85	0.993533
3144			14	85	0.993533
3204	80	20			1.0
3206	80			6	0.999961
3210	13			86	0.999973
3557		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain