SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4734

Length: 3556 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4734
CGAGGGTTCGATTCCTGCTGGCTATAATAGGGAGTCTTTTAAGATAGAGGGTTCGATTCCCGCTGGCTACAATAGGGAGTCTTTCAAGATAGATTATGGAGAACATTTTCTTTCGCAGCCGGACTCGTGTTCGACCAATCAGAAGACGCAGTCCGTGGAAACAAGGGATGATGAAGATATTTTATTGGCTCTTGCTCATCAAAAATACAAAGCTGGCAATTATTCCCAAGCTCTGGAACACTGCAATGTTGTTTATGAAAAAAATCCTCGACGCACAGACAATCTTCTTCTTCTTGGTGCTATATACTACCAGCTACATGATTTTGATATGTGCATTACCAAAAATGAGGAAGCCATCAGGATTGATCCTCAATTTGCTGAGTGTTATGGAAATATGGCTAATGCCTGGAAGGAGAAAGGAAACATCGATCTTGCAATCCAATTTTATCTGATTGCTATTGAGCTACGGCCAAATTTTTGTGATGCGTGGTCTAATCTAGCCAGTGCATATATGCGCAAAGGAAGATTGACTGAAGCGGCAGAATGCTGTCGTCAAGCTCTTCATCTTAACCCTCGTCTTGTTGATGCGCACAGCAACCTTGGAAATCTTCTGAAGGCACAAGGATTAACTCAACATGCATACCTATGTTACATGGAGGCTTTGCGCATACAACCAACTTTTGCGATTGCTTGGTCGAATCTAGCAGGCCTTTTTATGGAAGCAGGAGATTACGCCAAAGCCCTTGCATATTATAAGGAAGCAATCAGACTGAAACCCAACTTTGCTGATGCACACCTGAATCAAGGGAATGTATTGAAGGCAATGGGCAGACCTCAAGATGCAATTATGTGCTATCAACGTGCCATTCAACTAAGGCCGGACTATGCAATTGCTTATGGGAATTTAGCAAGCGTTTACTATGAACAAGGCCAAATGGATTTGGCGATAATGCATTACAAACAAGCTATAATGCTGGATTCGACATTTGTGGAGGCTTACAACAATTTGGGAAATGCTTTGAAAGATGCTGGACGAGTGGATGAAGCAATTGCTTGTTACCAGTCTTGTCTTCAGCTCCAAGCAAATCATCCACAAGCTCTCACCAATCTTGGAAACATTTACATGGAGTGGAATATGATCAGTGCAGCTGCCAATTTTTATAAGGCAACCCTAGCTGTAACAACAGGCTTGTCTGCCCCATACAGTAATTTAGCAATAATCTACAAACAGCAGGGGCATTATGCAGAAGCTATTGCTTGCTATAATGAAGTTCTTCGGATAGATCCAATGGCAGCTGATGGGCTTGTAAACAGAGGAAACACTCTCAAAGAGATTGGTCGTGTTAGCGAAGCAATTCAGGATTATATACGAGCTGTTACAGTTAGACCTACCATGGCTGAAGGCCATGCAAACCTTGCCTCTGCTTACAAAGACAGTGGTCATGTGGAAGCTGCTATTAAGAGTTACAAACAAGCTTTGGCGCTGCGCCCTGATTTTCCAGAAGCTACATGCAATCTTTTGCATACCTTACAGTGTGTATGTAGTTGGGAAGACCGTGAGAATAAGTTTGGTGAAGTTGAGGGCATCATCAGGAGGCAAATCAAGCTTTCTGTTCTCCCTAGTGTGCAACCATTTCATGCAATTGCTTATCCAATTGATCCTGTACTTGCATTAGACATCAGCCGCAAGTATGCGGAACATTGTACTCTAATTGCATCTCGTTTTGGGCTTCCACCTTTCAACCATCCGCCTCCTATTCCTGTCAAGAGTGAAGGTGGAAGTGGCAGACTTAGAGTGGGGTACGTGAGCAGTGATTTTGGCAACCATCCACTTTCCCATCTAATGGGATCTGTATTTGGTATGCACAATCGGGAGCATGTTGAGATATTTTGCTATGCTTTAAGCCAGAATGATGGCACTGAATGGAGGCAGCGCATACAAGCAGAAGCAGAACATTTTATTGATGTTTCTTCTCTTTCTTCTGATGTAATTGCAAGAAAGATTGCTGAAGATAAGATCCAGGTTCTTGTTAATTTGAATGGATACACTAAGGGTGCTCGAAATGAAATATTTGCGATGCAACCAGCTCCAGTACAAGTATCGTACATGGGATTTCCTGGAACCACTGGTGCTGAGTACATTCATTATTTGGTGACAGATGAGTTTGTCTCTCCCATGCGGTTTGCACATATATATTCGGAAAAGATTGTTCATATGCCACATTGCTATTTTGTTAATGATTACAAGCAGAAAAATCGAGATGTTTTGGATCCTAATTGCCAACATAAACGTTCAGATTATGGTTTGCCAGAAGACAAATTTTTGTTTGCGTGCTTTAATCAGTTGTACAAAATGGATCCGGATATCTTCATTACATGGTGCAATATTCTGAAACGTGTACCAAATAGTGCCCTGTGGCTTCTAAGGTTTCCTGCAGCCGGAGAGAATCGGTTGCGAGCATTTGCTGCTGCCCAGGGCGTCCGACCTGATCAAATTATTTTCACTGATGTTGCTGCAAAAAATGAACACATTCGTCGTAGTGCTTTGGCAGATCTTTTCCTTGATACGCCGTTATGCAATGCTCATACCACTGGAACTGATATTCTCTGGGCTGGTCTACCTATGATCACTCTTCCGCTGGAGAAGATGGCCACACGTGTGGCCGGATCTCTGTGTTTCGCAACAGGTTTTGGAGAAGAGATGGTAGTTAGCAGCATGCAAGAATATGAGGAGAAGGCTGTTTCTCTTGCTCTATCGCCTTCCAGACTTCAAGCTCTTACAGCTAAACTTAGAGCAGTACGGTTGACATGCCCTCTGTTTGATACTGCTCGATGGGTGCGGAATTTGGATAGGGCATATTATAAGATGTGGAACTTATACTGCTCAGGGGAGCATCCACAGCCCTTCAAAGTTACTGAGAATGATACTGAATGTCCTTATGATCATTAGTCTGTTAATGAAGTTGGTTAGAAAGGTTTTCATTTAGGAAGCCAGATGTTAGCGCTGGAGTTTCTCCAAATGATACACTGAGTGAACTAGTAAGACCTCAGTGTTGATAGAAGCTTGTTGTCCATACTTTTGAAAATTGTGGCACACCAGCTTTAGTCGAGCGCGTAGGATGGCATTTCTTCATTCCTTTCCTTTGTATATAGTACCTGGAGAGAAGAAAACGACCATGCGGGCTTATACCTGTTACTGATAAATACTACGACTTTGGGTTTTGGTCTTCATATGCAGTCGCAGAGTATCATGTTGGTGTCGTAGGATGAAAGTAATGTGTTCTAGCTGTATCCAACGTTTCTTGCTGAATTCATTTTTTTGCGAGGTTAGGTGGGGATTGCTTTATGTCAATGCTTTCCTTGTCAGGTGTTCTTTTGTCAATTTGTCAACTGTATTAAGTTCCAACAACAAAGAAATGTTTAAACTATAATCTTCGAATTAGAGTAATTAATGATATACATATATATTACACAAATAGATATCTTCTAAATTAAAATCTAACTGATCAAGTGGCCTTTGGATCAAGAAAGGAATAGAATGAAAGGTGTTTCCTGT

Ace file of the UniGene sp_v1.1_unigene4734

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	o-linked n-acetylglucosamine transferase, ogt, putative; K09667 polypeptide N-acetylglucosaminyltransferase [EC:2.4.1.-]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	81%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	81%
AutoFact	N-Glycan biosynthesis	00510	81%
AutoFact	Mucin type O-Glycan biosynthesis	00512	81%
AutoFact	Various types of N-glycan biosynthesis	00513	81%
AutoFact	Other types of O-glycan biosynthesis	00514	81%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	81%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533	81%
AutoFact	Lipopolysaccharide biosynthesis	00540	81%
AutoFact	Peptidoglycan biosynthesis	00550	81%
AutoFact	Glycerolipid metabolism	00561	81%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	81%
AutoFact	Sphingolipid metabolism	00600	81%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	81%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603	81%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604	81%
AutoFact	Carotenoid biosynthesis	00906	81%
AutoFact	Zeatin biosynthesis	00908	81%
AutoFact	Flavonoid biosynthesis	00941	81%
AutoFact	Anthocyanin biosynthesis	00942	81%
AutoFact	Flavone and flavonol biosynthesis	00944	81%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	81%
AutoFact	Betalain biosynthesis	00965	81%
AutoFact	Biosynthesis of type II polyketide products	01057	81%
AutoFact	Metabolic pathways	01100	81%
AutoFact	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein O-linked glycosylation	GO:0006493	Biological Process	0.0	86%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE4

Fln msg: atg_distance in limit (1-15): atg_distance = 12, No stop codon before M and M found is too far from subject M, your sequence is longer than subject: 874 - 533

Fln protein: MCITKNEEAIRIDPQFAECYGNMANAWKEKGNIDLAIQFYLIAIELRPNFCDAWSNLASAYMRKGRLTEAAECCRQALHLNPRLVDAHSNLGNLLKAQGLTQHAYLCYMEALRIQPTFAIAWSNLAGLFMEAGDYAKALAYYKEAIRLKPNFADAHLNQGNVLKAMGRPQDAIMCYQRAIQLRPDYAIAYGNLASVYYEQGQMDLAIMHYKQAIMLDSTFVEAYNNLGNALKDAGRVDEAIACYQSCLQLQANHPQALTNLGNIYMEWNMISAAANFYKATLAVTTGLSAPYSNLAIIYKQQGHYAEAIACYNEVLRIDPMAADGLVNRGNTLKEIGRVSEAIQDYIRAVTVRPTMAEGHANLASAYKDSGHVEAAIKSYKQALALRPDFPEATCNLLHTLQCVCSWEDRENKFGEVEGIIRRQIKLSVLPSVQPFHAIAYPIDPVLALDISRKYAEHCTLIASRFGLPPFNHPPPIPVKSEGGSGRLRVGYVSSDFGNHPLSHLMGSVFGMHNREHVEIFCYALSQNDGTEWRQRIQAEAEHFIDVSSLSSDVIARKIAEDKIQVLVNLNGYTKGARNEIFAMQPAPVQVSYMGFPGTTGAEYIHYLVTDEFVSPMRFAHIYSEKIVHMPHCYFVNDYKQKNRDVLDPNCQHKRSDYGLPEDKFLFACFNQLYKMDPDIFITWCNILKRVPNSALWLLRFPAAGENRLRAFAAAQGVRPDQIIFTDVAAKNEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCFATGFGEEMVVSSMQEYEEKAVSLALSPSRLQALTAKLRAVRLTCPLFDTARWVRNLDRAYYKMWNLYCSGEHPQPFKVTENDTECPYDH*

Protein Length: 875

Fln nts: CGAGGGTTCGATTCCTGCTGGCTATAATAGGGAGTCTTTTAAGATAGAGGGTTCGATTCCCGCTGGCTACAATAGGGAGTCTTTCAAGATAGATTATGGAGAACATTTTCTTTCGCAGCCGGACTCGTGTTCGACCAATCAGAAGACGCAGTCCGTGGAAACAAGGGATGATGAAGATATTTTATTGGCTCTTGCTCATCAAAAATACAAAGCTGGCAATTATTCCCAAGCTCTGGAACACTGCAATGTTGTTTATGAAAAAAATCCTCGACGCACAGACAATCTTCTTCTTCTTGGTGCTATATACTACCAGCTACATGATTTTGATATGTGCATTACCAAAAATGAGGAAGCCATCAGGATTGATCCTCAATTTGCTGAGTGTTATGGAAATATGGCTAATGCCTGGAAGGAGAAAGGAAACATCGATCTTGCAATCCAATTTTATCTGATTGCTATTGAGCTACGGCCAAATTTTTGTGATGCGTGGTCTAATCTAGCCAGTGCATATATGCGCAAAGGAAGATTGACTGAAGCGGCAGAATGCTGTCGTCAAGCTCTTCATCTTAACCCTCGTCTTGTTGATGCGCACAGCAACCTTGGAAATCTTCTGAAGGCACAAGGATTAACTCAACATGCATACCTATGTTACATGGAGGCTTTGCGCATACAACCAACTTTTGCGATTGCTTGGTCGAATCTAGCAGGCCTTTTTATGGAAGCAGGAGATTACGCCAAAGCCCTTGCATATTATAAGGAAGCAATCAGACTGAAACCCAACTTTGCTGATGCACACCTGAATCAAGGGAATGTATTGAAGGCAATGGGCAGACCTCAAGATGCAATTATGTGCTATCAACGTGCCATTCAACTAAGGCCGGACTATGCAATTGCTTATGGGAATTTAGCAAGCGTTTACTATGAACAAGGCCAAATGGATTTGGCGATAATGCATTACAAACAAGCTATAATGCTGGATTCGACATTTGTGGAGGCTTACAACAATTTGGGAAATGCTTTGAAAGATGCTGGACGAGTGGATGAAGCAATTGCTTGTTACCAGTCTTGTCTTCAGCTCCAAGCAAATCATCCACAAGCTCTCACCAATCTTGGAAACATTTACATGGAGTGGAATATGATCAGTGCAGCTGCCAATTTTTATAAGGCAACCCTAGCTGTAACAACAGGCTTGTCTGCCCCATACAGTAATTTAGCAATAATCTACAAACAGCAGGGGCATTATGCAGAAGCTATTGCTTGCTATAATGAAGTTCTTCGGATAGATCCAATGGCAGCTGATGGGCTTGTAAACAGAGGAAACACTCTCAAAGAGATTGGTCGTGTTAGCGAAGCAATTCAGGATTATATACGAGCTGTTACAGTTAGACCTACCATGGCTGAAGGCCATGCAAACCTTGCCTCTGCTTACAAAGACAGTGGTCATGTGGAAGCTGCTATTAAGAGTTACAAACAAGCTTTGGCGCTGCGCCCTGATTTTCCAGAAGCTACATGCAATCTTTTGCATACCTTACAGTGTGTATGTAGTTGGGAAGACCGTGAGAATAAGTTTGGTGAAGTTGAGGGCATCATCAGGAGGCAAATCAAGCTTTCTGTTCTCCCTAGTGTGCAACCATTTCATGCAATTGCTTATCCAATTGATCCTGTACTTGCATTAGACATCAGCCGCAAGTATGCGGAACATTGTACTCTAATTGCATCTCGTTTTGGGCTTCCACCTTTCAACCATCCGCCTCCTATTCCTGTCAAGAGTGAAGGTGGAAGTGGCAGACTTAGAGTGGGGTACGTGAGCAGTGATTTTGGCAACCATCCACTTTCCCATCTAATGGGATCTGTATTTGGTATGCACAATCGGGAGCATGTTGAGATATTTTGCTATGCTTTAAGCCAGAATGATGGCACTGAATGGAGGCAGCGCATACAAGCAGAAGCAGAACATTTTATTGATGTTTCTTCTCTTTCTTCTGATGTAATTGCAAGAAAGATTGCTGAAGATAAGATCCAGGTTCTTGTTAATTTGAATGGATACACTAAGGGTGCTCGAAATGAAATATTTGCGATGCAACCAGCTCCAGTACAAGTATCGTACATGGGATTTCCTGGAACCACTGGTGCTGAGTACATTCATTATTTGGTGACAGATGAGTTTGTCTCTCCCATGCGGTTTGCACATATATATTCGGAAAAGATTGTTCATATGCCACATTGCTATTTTGTTAATGATTACAAGCAGAAAAATCGAGATGTTTTGGATCCTAATTGCCAACATAAACGTTCAGATTATGGTTTGCCAGAAGACAAATTTTTGTTTGCGTGCTTTAATCAGTTGTACAAAATGGATCCGGATATCTTCATTACATGGTGCAATATTCTGAAACGTGTACCAAATAGTGCCCTGTGGCTTCTAAGGTTTCCTGCAGCCGGAGAGAATCGGTTGCGAGCATTTGCTGCTGCCCAGGGCGTCCGACCTGATCAAATTATTTTCACTGATGTTGCTGCAAAAAATGAACACATTCGTCGTAGTGCTTTGGCAGATCTTTTCCTTGATACGCCGTTATGCAATGCTCATACCACTGGAACTGATATTCTCTGGGCTGGTCTACCTATGATCACTCTTCCGCTGGAGAAGATGGCCACACGTGTGGCCGGATCTCTGTGTTTCGCAACAGGTTTTGGAGAAGAGATGGTAGTTAGCAGCATGCAAGAATATGAGGAGAAGGCTGTTTCTCTTGCTCTATCGCCTTCCAGACTTCAAGCTCTTACAGCTAAACTTAGAGCAGTACGGTTGACATGCCCTCTGTTTGATACTGCTCGATGGGTGCGGAATTTGGATAGGGCATATTATAAGATGTGGAACTTATACTGCTCAGGGGAGCATCCACAGCCCTTCAAAGTTACTGAGAATGATACTGAATGTCCTTATGATCATTAG___TCTGTTAATGAAGTTGGTTAGAAAGGTTTTCATTTAGGAAGCCAGATGTTAGCGCTGGAGTTTCTCCAAATGATACACTGAGTGAACTAGTAAGACCTCAGTGTTGATAGAAGCTTGTTGTCCATACTTTTGAAAATTGTGGCACACCAGCTTTAGTCGAGCGCGTAGGATGGCATTTCTTCATTCCTTTCCTTTGTATATAGTACCTGGAGAGAAGAAAACGACCATGCGGGCTTATACCTGTTACTGATAAATACTACGACTTTGGGTTTTGGTCTTCATATGCAGTCGCAGAGTATCATGTTGGTGTCGTAGGATGAAAGTAATGTGTTCTAGCTGTATCCAACGTTTCTTGCTGAATTCATTTTTTTGCGAGGTTAGGTGGGGATTGCTTTATGTCAATGCTTTCCTTGTCAGGTGTTCTTTTGTCAATTTGTCAACTGTATTAAGTTCCAACAACAAAGAAATGTTTAAACTATAATCTTCGAATTAGAGTAATTAATGATATACATATATATTACACAAATAGATATCTTCTAAATTAAAATCTAACTGATCAAGTGGCCTTTGGATCAAGAAAGGAATAGAATGAAAGGTGTTTCCTGT

Fln Alignment:

sp_v1.1_unigene4734___AGLFMEAGDYAKALAYYKEAIRLKPNFADAHLNQGNVLKAMGRPQDAIMCYQRAIQLRPDYAIAYGNLASVYYEQGQMDLAIMHYKQAIMLDSTFVEAYNNLGNALKDAGRVDEAIACYQSCLQLQANHPQALTNLGNIYMEWNMISAAANFYKATLAVTTGLSAPYSNLAIIYKQQGHYAEAIACYNEVLRIDPMA-----ADGLVNRGNTLKEIGRVSEAIQDYIRAVTVRPTMAEGHANLASAYKDSGHVEAAIKSYKQALALRPD
D5ADE4______________AEYYHQCGEYQKCFELTTALFERDPFHLKCTLVHIATAMELGHKNELYLMACNLVKDYPQKAISWFAVGCYYYCIRQFDQSRRYFSKATSLDGTFAPAWIGFGNAFAAKDESDQAMAAFRTCARLFPGCHLPTLYIGLEYMRTHSYKIAEQFFMQAQRICPTDPLVYHELGVVSYKTQEYDKAVRWFEKTLSLVPLPLTETWEPTLVNMAHALRKLRRYPQAIKSYEKALDLSSRNVSTYAGLGYTYHLQNKFDEAIHLYHKALALKPD

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
415	11		88		0.923564
436	75			25	1.0
442	62		37		1.0
692	50			50	1.0
696			50	50	1.0
795	75		25		0.996473
901	66		33		1.0
983	12			87	0.992554
985		87	12		0.992554
987	85		14		0.993533
1166		12		87	0.992554
1184	88			11	0.923564
1188	87		12		0.992554
1193		87	12		0.992554
1299	10		90		0.90298
1307			90	10	0.90298
1754			85	14	0.993533
1908	90		10		0.90298
1910		90	10		0.90298
2103			87	12	0.992554
2117	90		10		0.90298
2272		11		88	0.923564
2274		11	88		0.923564
2278		88	11		0.923564
2280	88		11		0.923564
2282			11	88	0.923564
2285	11	88			0.923564
2288	88		11		0.923564
2290	88	11			0.923564
2444	11	88			0.923564
2445			88	11	0.923564
2447	88		11		0.923564
2504	10			90	0.90298
2506			10	90	0.90298
2507		90	10		0.90298
2508	90		10		0.90298
2594		90	10		0.90298
2595	90	10			0.90298
2644		11		88	0.923564
2964		8	92		0.999718
3233		20		80	0.995493
3431		25		75	0.996473
3479	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
283	295	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain