SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4711

Length: 1356 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4711 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSP21; HSP21 (HEAT SHOCK PROTEIN 21)	-	-	3.0e-29	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	heat shock protein	-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	64%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	64%
Blast2go	response to heat	GO:0009408	Biological Process	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	0.0	64%
Blast2go	HSP20-like chaperone	IPR008978	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNU0

Fln msg: your sequence is longer than subject: 397 - 264

Fln protein: MACSMSNMPAISTRAIPISAINGITARSKLGFNTSTTINAVTFFPVAKRLQSNVGLTSAYRWRTNGFIVRSQTGPENMAKLQDNTIIKTEADQKTRPVKFPGNTASKTEADQKLGAVADITSKTEADQKLGSVADITSKTEADQSTASKTRADQKREVVADSASKIGADQKPVAVRDITSKPKSDQNTTTKMEGNLNLLVMGDTTSKSEVDEKPMAVENTASKNYTDQKPTTVISPFGIADLILPMRTMKQMIDMLEQDALSVRTPWCIMENENELKMRFDLPGLSKEDVKVCVVDHRFLVIEEQEKKEKDLWSFYSTYNTRLMLPENYETNKIKTELKNGVLNITIPRVKVESKVKDLSQNRETGKIGAEFKKGVLNITIPMSKVESKVKDLSIK*

Protein Length: 398

Fln nts: ATGGGACGGCTTTTTGTTCTTGCTAACTTCAGACTAAAGCCTCTTGTCGAAGACTCTCTGTATAATGCATTTGCTGCAACCTCTCATCTCACATATGCTTCATAAGCTATAATTTATTTTCCAATTCTGCAGGTTCGCAGGTTCTGCTGGCTAAAGA_-_ATGGCTTGCTCTATGTCTAACATGCCTGCAATTTCTACCCGTGCAATTCCAATATCGGCTATAAATGGAATCACTGCTCGTTCGAAGCTTGGATTTAACACCAGTACTACTATTAATGCTGTCACTTTCTTTCCCGTTGCCAAACGGCTGCAGTCCAATGTAGGGTTGACTTCGGCTTATCGGTGGCGTACAAATGGTTTTATTGTCAGATCACAAACCGGCCCTGAAAACATGGCCAAATTGCAGGACAATACTATAATCAAAACCGAGGCTGACCAGAAGACTCGGCCTGTGAAATTTCCGGGGAATACTGCAAGCAAAACCGAGGCTGACCAGAAGCTCGGAGCTGTTGCAGATATTACCAGTAAAACCGAGGCTGACCAGAAGCTCGGATCTGTTGCAGATATTACAAGTAAAACCGAGGCTGACCAGAGCACTGCAAGCAAGACCCGGGCTGATCAGAAGCGCGAGGTTGTGGCAGATTCTGCAAGCAAAATCGGGGCTGATCAAAAGCCCGTGGCTGTGAGAGATATTACAAGCAAACCCAAGTCTGACCAGAATACTACAACCAAAATGGAGGGTAACCTGAACCTCCTGGTTATGGGAGATACTACAAGCAAATCCGAGGTTGACGAAAAGCCCATGGCTGTGGAAAATACTGCAAGCAAGAATTACACTGACCAGAAGCCGACGACGGTGATTTCGCCATTTGGTATTGCGGACCTAATTTTGCCCATGAGAACCATGAAGCAGATGATTGATATGTTGGAGCAGGACGCGTTATCGGTTCGAACACCGTGGTGCATTATGGAAAACGAAAATGAACTGAAAATGAGATTCGACTTGCCCGGACTTTCCAAGGAGGATGTGAAGGTGTGTGTGGTGGACCACCGTTTTCTGGTGATCGAAGAGCAAGAAAAGAAGGAAAAGGACTTGTGGTCATTTTACAGCACCTACAATACTCGCCTGATGTTGCCTGAAAACTATGAGACGAACAAGATCAAGACGGAATTGAAGAACGGTGTGCTGAATATCACCATCCCCAGGGTCAAGGTGGAGTCCAAGGTTAAGGATCTTTCTCAGAACCGCGAGACGGGCAAAATCGGGGCAGAATTCAAGAAAGGAGTGCTGAATATCACCATCCCAATGAGTAAAGTGGAGTCCAAGGTTAAGGATCTTTCTATTAAGTGA___GTGAGAAT

Fln Alignment:

sp_v1.1_unigene4711___MACSMSNMPAI-STRAIPISAINGITARSKLGFNTSTTINAVTFFPVAKRLQSNVGLTSAYRWR-TNGFIVRSQTGPENMAKLQDNTIIKTE--ADQKTR
A9NNU0______________MACSLSYLTAVASTCTTPISARNGASGPWKLGC-TRSSINVVTFFPVGKRLQSNVGWSSSSHQRLTNALVVRAESGKENVAGAIDLKVTKSKNVDDEKHR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1137		10		90	0.90298
1183		10		90	0.90298
1184		10		90	0.90298
1186			90	10	0.90298
1197	88		11		0.923564
1232	88	11			0.923564
1233		11	88		0.923564
1234	77	22			0.999999
1265		16		83	0.994512
1271		20	80		0.995493
1272	80	20			0.995493
1273		20	80		0.995493
1302	75	25			0.996473
1303		25	75		0.996473
1304	75	25			0.996473
1305		25	75		0.996473
1307			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain