SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4707

Length: 1695 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4707

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4,6-dehydratase (EC:4.2.1.76); K12450 UDP-glucose 4,6-dehydratase [EC:4.2.1.76]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	rhamnose synthase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucose 4,6-dehydratase.	EC:4.2.1.76	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	UDP-glucose 4,6-dehydratase.	EC:4.2.1.76	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	UDP-rhamnose biosynthetic process	GO:0010253	Biological Process	84%
Blast2go	flavonol biosynthetic process	GO:0051555	Biological Process	84%
Blast2go	auxin efflux	GO:0010315	Biological Process	84%
Blast2go	UDP-glucose 4,6-dehydratase activity	GO:0050377	Molecular Function	84%
Blast2go	UDP-L-rhamnose synthase activity	GO:0010280	Molecular Function	84%
Blast2go	soluble fraction	GO:0005625	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	84%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN20

Fln msg: your sequence is longer than subject: 373 - 300

Fln protein: MDWYISHPDWWGDVTGALLPHPRMLTMAGVGRLSDGLEMMAGVGRLSDSLDENASAISPEVNNSKQDRMLIPSKSISQKPALKFLIYGRTGWIGGLLGQICEKQGISFEYGYGRLENRSQIQMDIQNVKPTHVFNAAGVTGRPNVDWCESHKPETIRTNVVGTLNLADVCREQGLLLMNFATGCIFEYNDAHPEGSGIGFGEEDSPNFTGSFYSKTKAMVEELLKEFENVCTLRVRMPISSDLSNPRNFITKITRYNKVVNIPNSMTVLDELLPISIEMAKRNCKGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVAPRSNNELDTFKLKEAFPELLPIKDSLLKYVFEPNKNSSLTNGV*

Protein Length: 374

Fln nts: GACAACAGGCCTTTCAATGATCAGAGATACTTCCTTGATGATCAGAAGCTGAAGGATCTGGGTTGGTCAGAGCGGACGACTTGGCAAGATGGACTGAAGAAAACA_-_ATGGACTGGTATATAAGTCATCCAGATTGGTGGGGTGATGTTACTGGTGCTTTGCTACCTCATCCTCGAATGCTTACGATGGCTGGAGTTGGGAGACTCTCTGATGGCCTAGAGATGATGGCCGGAGTTGGGAGACTCTCTGATAGCTTGGATGAGAATGCCTCGGCTATTTCTCCCGAGGTTAATAATTCGAAACAGGACCGAATGCTCATTCCCTCGAAAAGTATCTCTCAGAAACCAGCCTTGAAATTTTTGATTTATGGTCGCACTGGATGGATTGGGGGCCTCCTTGGTCAGATATGTGAGAAGCAAGGTATTTCCTTTGAGTATGGATATGGCAGATTGGAAAATCGGTCTCAGATTCAGATGGATATCCAGAATGTGAAGCCCACCCATGTTTTTAATGCTGCAGGTGTGACTGGTAGGCCTAATGTTGACTGGTGTGAATCTCACAAGCCAGAGACTATTCGTACCAATGTAGTAGGAACTTTGAATCTGGCAGATGTCTGCAGGGAACAAGGGCTTTTACTCATGAACTTTGCTACTGGGTGTATATTTGAATATAATGATGCTCACCCAGAGGGCAGTGGTATTGGATTCGGGGAGGAAGACAGTCCAAACTTCACTGGATCATTCTATTCTAAGACAAAGGCCATGGTTGAAGAGCTTCTGAAAGAATTTGAGAATGTTTGCACCCTTCGAGTTCGAATGCCTATCTCATCTGATCTGAGCAACCCTCGCAATTTTATTACAAAAATCACCCGTTACAATAAAGTAGTTAACATACCAAACAGCATGACTGTACTTGATGAGTTGTTGCCAATCTCAATTGAGATGGCAAAAAGAAATTGCAAAGGCATATGGAACTTTACAAATCCAGGCGTTGTCAGCCATAATGAGATTTTGGAGATGTACAGAGATTACATTGATCCGAACTTCAAGTGGGTAAATTTTAACCTTGAAGAACAGGCTAAAGTGATAGTTGCCCCTCGAAGCAACAATGAACTGGATACGTTCAAATTGAAGGAAGCATTTCCAGAGCTGTTGCCAATCAAGGATTCACTTTTGAAGTATGTATTTGAGCCTAACAAGAATAGCAGTCTTACAAATGGAGTATAG___TCATTAGTTGGTATTTGTTTAGTACCAAGTTATGTAGTTTATTTGGCTTCCTTATTTCATTGAGCTTCATAATTTTTCTCAGTTTAGATCCAGGCATCAAGAGGGCAGCATTTTTCTTGGCTTGAATATATTCTTTATGACTCATGAGAATATTGGACAGTCGGCAGTATTTGTGTCAAAGCTATTTATCTGTCGAGGAACATCACTGCAGATGTTGCTTCAATTCATTCGTTCATTGAAAGTTGTAGGATAATCTGCTGATGAAGCTGTCATGTGATACTATTTACCCTGTAAGTCCAATACTGATAAAGTTGTAGTTTCGGCAGTATTACTTGCATGCGGGGAATGGCACCAAGTTTCTCCTTTCCATTGTCTTTGCAAGATTACAGGAATTAATTCAATTCTTACAACTTTTATATTGCTTAAAATAAATACGCTGGATAAACTGAGAGAGCTGTGATTTGCCACAAA

Fln Alignment:

sp_v1.1_unigene4707___LKFLIYGRTGWIGGLLGQICEKQGISFEYGYGRLENRSQIQMDIQNVKPTHVFNAAGVTGRPNVDWCESHKPETIRTNVVGTLNLADVCREQGLLLMNFATGCIFEYNDAHPEGSGIGFGEEDSPNFTGSFYSKTKAMVEELLKEFENVCTLRVRMPISSDLSNPRNFITKITRYNKVVNIPNSMTVLDELLPISIEMAKRNCKGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVAPRSNNELDTFKLKEAFPELLPIKDSLLKYVFEPNK
A9NN20______________LKFLIYGRTGWIGGEIGKLCEAQGIAFEFGKGRLENRSQLQEDIEAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADLCRQHGLILINYATGCIFEYDEKHPLGSGIGFKEEDTPNFMGSYYSKTKAMVEDLLKNFENVCTLRVRMPISSDLSNPRNFITKISRYDKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYIDPSYTWRNFTLEEQAKVIVAARSNNEMDASKLKKEFPELLPIKESLVKYVFEPNQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1022	87		12		0.992554
1278	15	85			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain