SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4703

Length: 1428 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4703

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	85%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	85%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	85%
Blast2go	Protein kinase-like domain	IPR011009	-	85%
Blast2go	Armadillo-like helical	IPR011989	-	85%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	85%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	85%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 131 aas, your sequence is shorter than subject: 475 - 902

Fln protein: HGDCDVQTFRFQFDRKSSDRHQSAVIHYYSCRNWCNRRS*DLIPVRGLGTACPIWA*SELGFYEVLRGVS*NMQDGYGPFTSSLVFRSSEVNNGGFGRGMNPSLRSRSPRASSVYKMTKENGCSAIRWKKGELIGSGAYGRVYMGMNLDSGELLAVKQVLIAANNGSKEKAQAHIRELEEEVKLLRNLSHPNIVRYLGTAREEEALNILLEFVPGPSMSPILGKFGSFTEPVIRMYTKQLLQGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATVSEAKSMKGTPYWMAPEVIRQTGHGLSADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHISPEAKDFLLKCLKKEPNLRPTAAELLQHPFVVGNYRDPHPLVRSSAVRDYRDPHPLVRSSAVRDYRDPHPLVRSSTVGRYRDPPPCIGGNRDPLPLVRTSALERSLNIYASQLPT*

Protein Length: 476

Fln nts: TACATGGGGATTGTGATGTTCAAACATTCAGATTTCAATTCGATCGAAAATCCTCAGATCGTCATCAGAGCGCTGTGATTCACTATTATTCCTGCAGAAACTGGTGCAATCGGAGATCCTGAGATTTGATCCCGGTTCGTGGATTGGGCACAGCTTGCCCCATCTGGGCATGATCAGAGTTAGGGTTTTATGAAGTGTTGAGAGGGGTTTCCTGAAATATGCAGGACGGATACGGGCCTTTCACGAGTTCATTGGTGTTCAGGAGCTCTGAGGTTAACAATGGAGGTTTTGGGCGCGGGATGAATCCAAGTTTGAGGTCGAGGTCGCCCCGGGCGAGTTCTGTCTATAAAATGACTAAGGAAAATGGCTGCTCTGCAATTAGGTGGAAGAAAGGGGAGCTTATTGGCTCTGGGGCTTACGGGAGAGTTTATATGGGCATGAATTTGGACTCTGGGGAGCTTTTGGCCGTCAAGCAGGTCTTGATTGCGGCCAACAATGGATCAAAGGAGAAGGCTCAGGCCCATATCAGAGAGCTCGAGGAGGAGGTTAAATTGCTTCGCAACCTATCCCATCCGAACATAGTGCGATATCTAGGAACAGCTAGAGAAGAAGAAGCTTTGAATATCCTTCTGGAATTTGTTCCGGGACCATCGATGTCACCCATTCTTGGCAAATTTGGTTCTTTCACAGAACCGGTTATTAGAATGTACACAAAACAACTTCTCCAGGGGCTCGAGTATCTCCATAAGAATGGTATCATGCATAGAGATATCAAGGGGGCAAATATTCTTGTGGACAACAAGGGCTGTATTAAGTTAGCAGACTTTGGTGCATCCAAGCAAGTGGTTGAGCTGGCAACAGTTTCTGAGGCAAAGTCAATGAAGGGGACACCATATTGGATGGCACCTGAAGTCATTCGTCAAACTGGACATGGCTTGTCTGCGGATATATGGAGTGTTGGTTGTACTGTTATTGAAATGGCAACAGGCAAACCTCCATGGAGCCAGCAATTTCAAGAGGTGGCTGCATTATTTCATATTGGAACAACAAAGTCACACCCACCAATTCCAGATCATATCTCACCAGAGGCAAAAGATTTTCTACTGAAATGTTTGAAGAAAGAACCAAATTTGAGGCCCACTGCAGCTGAATTGCTTCAGCATCCTTTTGTCGTTGGCAACTACCGTGATCCACATCCTCTTGTTAGGTCCTCTGCTGTGAGGGACTACCGAGATCCACATCCTCTTGTTAGGTCCTCTGCTGTGAGGGACTACCGAGATCCACATCCTCTTGTTAGATCCTCTACCGTCGGACGCTACCGAGATCCACCTCCTTGTATTGGGGGTAACAGAGATCCACTTCCTCTTGTTAGGACCTCGGCTCTGGAACGCTCTCTGAATATTTACGCCAGTCAACTTCCTACATAAG

Fln Alignment:

sp_v1.1_unigene4703___RWKKGELIGSGAYGRVYMGMNLDSGELLAVKQVLIAANNGSKEKAQAHIRELEEEVKLLRNLSHPNIVRYLGTAREEEALNILLEFVPGPSMSPILGKFGSFTEPVIRMYTKQLLQGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATVSEAKSMKGTPYWMAPEVIRQ--TGHGLSADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHISPEAKDFLLKCLKKEPNLRPTAAELLQHPFV
B8LR19______________RWQKGKLLGCGTFGTVYVGFNRETGDMCAMKEVPLVPDDS---KSSESIKQLEQEINLLSGLEHPNIVQYYGSETVEDLFYIYLEYVPGGSIYKLVNDYGPLEEPVIRIYTRQILSGLAYLHSMNTVHRDIKGGNILVDTYGRVKLADFGMAKHINGPAT---PLSLKGSPYWMAPEVLMQKNTGHDLAVDIWSLGCTVIEMATGKPPWS-EYEGAAAMFKVFKSEV-PPIPDSLSPEGRHFVQCCLCRNPAQRPKASQLLEHLFV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
267		66		33	0.997452
277	33		66		1.0
294	25	75			0.996473
295			66	33	0.997452
296		66	33		0.997452
418	66		33		0.997452
645			33	66	0.997452
646			66	33	0.997452
648	33			66	0.997452
649		33	66		0.997452
650		33	66		0.997452
651	66			33	0.997452
653		66	33		0.997452
654			33	66	0.997452
655	66	33			0.997452
657			33	66	0.997452
1118	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain