SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4686

Length: 2166 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4686
CGTCGTGACCTTGGCTGTCACTCAGTTCAAATATCTGCTTTTGGGGGAGACATTAACAGAAAAATTATCTGAAAATAGTAAAGGTTGGGGAAATTAGGGTATTTATCAGAGCCGGGTCTGTGATTGTTATCAAAGTCTTGCTTTGGGGACTGAATTGTTAATCCTTTGGTCATATGTGAAACGGGTTACAGAAGAAAATTCTGTCAATAGTGAATTTCGATATTGTATTGTTGATGTCTCAACAATGATGTTTTAATGTTGCAGTGTATGGGGAATTGGATTTGATTTATTCTAGGAAATTGGTAACTATTTTGTTTATTGCAAACAATCCGCTGGTTTCTACAACAATTGAACTGGTGGTTTTGCCTGTGAACTGAGTTGGTATATATTGAATTGCTCTGACTCCAAGGATTTAAAGGAATGGCAGGGTGTAGAGCAGCAATTGTTGTTGGTCACTTACCAGTCCTCCGTGAAAGGCCCAGTCATGGTACCAAGAGGGTAAATAATCATAGATACAGTGTGCAGAAAGTAGAACAAATGCCAATACATAGTGAAAGATTCAACTGTACAGTATACGATGGTGCCCGAGTAAGGCTGGGTGCTGGTAATTGTTCTCCAATTTTTACTGATGTGGGTAGAGGGCTGGTGTGGATTCATGGTGTGAATGTACTGAAAAGAAATCTGAGTAAAAACTCTCAGATGAAACCCTTTTCCCAAACAAGGGTGTGTGTCGTTCGGGCCCTCGCAATGGAAGTAACTGCTTTTCTACCAGATGAGGGTAAGTTGAGATCTTGGCAAGGAAGCCGCTTGACTGGTTCTGGTATGGGCACGATACCGAGCTTACCTCCTAACAGAGCAGATGACCCATCCCTGGGCAATCCTCTACTTCGGTTTGAACACATGGGTTGTGGTTGGCTTGGGGTGATTATGGAGTGGGAAGGAGTGATTGTCGAAGACGATCCTCGTATAGAAAACAGGGCATGGTTAGCTCTTGCAGAGGAGGAAGGCAAGAGGTCACCTGCAACATTTATTTTGCAAAGAGTAGAAGGGATGAAAAATGAACATGCCATATCCGAGGTCCTATGTTGGTCTAGGGATCCTATTAATGTCAGAAGATTGGCCTCCAGGAAAGAGGAGTTGTATCAAGAGATGCAGGGTGGGTTGTGTCAACTTAGGCCAGGTTCTCAAGAATTTCTGGTTACTTTGAAAAAACACAAGATACCGATTGCCCTGGCCTCTACCAGGCCAAGGAAGTACCTGGAAAAGGCAATTGAAGCTGTTGGTATGCAGGGATTCTTTGATGTTGTAGTGGCAGCTGAAGATGTATATAGAGGTAAACCAGACCCAGAAATGATCATGTATGCAGCACAGCTTCTAAACATTATATGCGAGAGATGTATTTTGTTTGGAAATTCTAACTCTAGTGTCGAAGCTAGCCATGATATTTGCATGAAATGTGTGGGTGTTGCTGGCAAGCATCCCGTGTTTGAACTCGGGGCCGCAGACATGGTGGTGAGAAGATTAGATGATCTTTCTCTCGTGGACCTGAAGAACTTGGCTGATCTCGACTCTCCAGAGTTCCAGCCTCCAGAGCCAGAACCTGAACTTGAACTTGAAGATGATGCAGACGAAGATAGAGTTACTGCTGTTGGTGTTCAGGATATTTGGTAAGGTGAGCCCATCTTAGTTGCAGTGTTATTGTATAATTCTAAGTCTGAAAGTGGTCTTCGGTGTTCCAGTTTCACTGAGGCCCTGATGGTGTCCAAGTGTGGCTGGAGACATGCACAAGCACCTTGTCTGTTAATTCTGTCATTGTAAATATATGAAGGAAACCGTCTACATTGGACTTCCTTCTCTTACTGTCTGTAAGATAACCTGGTATAGTAGATTGCTGATGCAATTGTTTGTAACTTTGTATGCAATAGCCGAAGCTTTGAAAATCTTCTCTGTATTGTAAAGCACCCGCCACCCTCACTTGCTAATCTGTTTAATCTTATTTTCTAGATTTTGATGCTCCTTTTGTCCTATATTTTAGTAAGGACTATGCTACTGGTAAAAATGGATTTTCTTTGGAAAACATCTGCTTTTTTTGAGCCTAGCAATTAGAATACAGGTATTGAGGCTTGACAGATGGGTACTCACATTATTTCTCTACAGCCAATGTTC

Ace file of the UniGene sp_v1.1_unigene4686

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-deoxyglucose-6-phosphate phosphatase, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLI7

Fln msg:

Fln protein: MAGCRAAIVVGHLPVLRERPSHGTKRVNNHRYSVQKVEQMPIHSERFNCTVYDGARVRLGAGNCSPIFTDVGRGLVWIHGVNVLKRNLSKNSQMKPFSQTRVCVVRALAMEVTAFLPDEGKLRSWQGSRLTGSGMGTIPSLPPNRADDPSLGNPLLRFEHMGCGWLGVIMEWEGVIVEDDPRIENRAWLALAEEEGKRSPATFILQRVEGMKNEHAISEVLCWSRDPINVRRLASRKEELYQEMQGGLCQLRPGSQEFLVTLKKHKIPIALASTRPRKYLEKAIEAVGMQGFFDVVVAAEDVYRGKPDPEMIMYAAQLLNIICERCILFGNSNSSVEASHDICMKCVGVAGKHPVFELGAADMVVRRLDDLSLVDLKNLADLDSPEFQPPEPEPELELEDDADEDRVTAVGVQDIW*

Protein Length: 418

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCAAATATCTGCTTTTGGGGGAGACATTAACAGAAAAATTATCTGAAAATAGTAAAGGTTGGGGAAATTAGGGTATTTATCAGAGCCGGGTCTGTGATTGTTATCAAAGTCTTGCTTTGGGGACTGAATTGTTAATCCTTTGGTCATATGTGAAACGGGTTACAGAAGAAAATTCTGTCAATAGTGAATTTCGATATTGTATTGTTGATGTCTCAACAATGATGTTTTAATGTTGCAGTGTATGGGGAATTGGATTTGATTTATTCTAGGAAATTGGTAACTATTTTGTTTATTGCAAACAATCCGCTGGTTTCTACAACAATTGAACTGGTGGTTTTGCCTGTGAACTGAGTTGGTATATATTGAATTGCTCTGACTCCAAGGATTTAAAGGA_-_ATGGCAGGGTGTAGAGCAGCAATTGTTGTTGGTCACTTACCAGTCCTCCGTGAAAGGCCCAGTCATGGTACCAAGAGGGTAAATAATCATAGATACAGTGTGCAGAAAGTAGAACAAATGCCAATACATAGTGAAAGATTCAACTGTACAGTATACGATGGTGCCCGAGTAAGGCTGGGTGCTGGTAATTGTTCTCCAATTTTTACTGATGTGGGTAGAGGGCTGGTGTGGATTCATGGTGTGAATGTACTGAAAAGAAATCTGAGTAAAAACTCTCAGATGAAACCCTTTTCCCAAACAAGGGTGTGTGTCGTTCGGGCCCTCGCAATGGAAGTAACTGCTTTTCTACCAGATGAGGGTAAGTTGAGATCTTGGCAAGGAAGCCGCTTGACTGGTTCTGGTATGGGCACGATACCGAGCTTACCTCCTAACAGAGCAGATGACCCATCCCTGGGCAATCCTCTACTTCGGTTTGAACACATGGGTTGTGGTTGGCTTGGGGTGATTATGGAGTGGGAAGGAGTGATTGTCGAAGACGATCCTCGTATAGAAAACAGGGCATGGTTAGCTCTTGCAGAGGAGGAAGGCAAGAGGTCACCTGCAACATTTATTTTGCAAAGAGTAGAAGGGATGAAAAATGAACATGCCATATCCGAGGTCCTATGTTGGTCTAGGGATCCTATTAATGTCAGAAGATTGGCCTCCAGGAAAGAGGAGTTGTATCAAGAGATGCAGGGTGGGTTGTGTCAACTTAGGCCAGGTTCTCAAGAATTTCTGGTTACTTTGAAAAAACACAAGATACCGATTGCCCTGGCCTCTACCAGGCCAAGGAAGTACCTGGAAAAGGCAATTGAAGCTGTTGGTATGCAGGGATTCTTTGATGTTGTAGTGGCAGCTGAAGATGTATATAGAGGTAAACCAGACCCAGAAATGATCATGTATGCAGCACAGCTTCTAAACATTATATGCGAGAGATGTATTTTGTTTGGAAATTCTAACTCTAGTGTCGAAGCTAGCCATGATATTTGCATGAAATGTGTGGGTGTTGCTGGCAAGCATCCCGTGTTTGAACTCGGGGCCGCAGACATGGTGGTGAGAAGATTAGATGATCTTTCTCTCGTGGACCTGAAGAACTTGGCTGATCTCGACTCTCCAGAGTTCCAGCCTCCAGAGCCAGAACCTGAACTTGAACTTGAAGATGATGCAGACGAAGATAGAGTTACTGCTGTTGGTGTTCAGGATATTTGGTAA___GGTGAGCCCATCTTAGTTGCAGTGTTATTGTATAATTCTAAGTCTGAAAGTGGTCTTCGGTGTTCCAGTTTCACTGAGGCCCTGATGGTGTCCAAGTGTGGCTGGAGACATGCACAAGCACCTTGTCTGTTAATTCTGTCATTGTAAATATATGAAGGAAACCGTCTACATTGGACTTCCTTCTCTTACTGTCTGTAAGATAACCTGGTATAGTAGATTGCTGATGCAATTGTTTGTAACTTTGTATGCAATAGCCGAAGCTTTGAAAATCTTCTCTGTATTGTAAAGCACCCGCCACCCTCACTTGCTAATCTGTTTAATCTTATTTTCTAGATTTTGATGCTCCTTTTGTCCTATATTTTAGTAAGGACTATGCTACTGGTAAAAATGGATTTTCTTTGGAAAACATCTGCTTTTTTTGAGCCTAGCAATTAGAATACAGGTATTGAGGCTTGACAGATGGGTACTCACATTATTTCTCTACAGCCAATGTTC

Fln Alignment:

sp_v1.1_unigene4686___MAGCRAAIVVGHLPVLRERPSHGTKRVNNHRYSVQKVEQMPIHSERFNCTVYDGARVRLGAGNCSPIFTDVGRGLVWIHGVNVLKRNLSKNSQMKPFSQTRVCVVRALAMEVTAFLPDEGKLRSWQGSRLTGSGMGTIPSLPPNRADDPSLGNPLLRFEHMGCGWLGVIMEWEGVIVEDDPRIENRAWLALAEEEGKRSPATFILQRVEGMKNEHAISEVLCWSRDPINVRRLASRKEELYQEMQGGLCQLRPGSQEFLVTLKKHKIPIALASTRPRKYLEKAIEAVGMQGFFDVVVAAEDVYRGKPDPEMIMYAAQLLNIICERCILFGNSNSSVEASHDICMKCVGVAGKHPVFELGAAXXXXXXXXXXXXXXXKNLADLXXXXXXXXXXXXXXXXXXXXXXXRVTAVGVQDIW
B8LLI7______________MAGCRTAIVVGHLPVLRERPNHGIKRVNNHRYSGQKVEQMPIHSERCNCTGHDGTPVRLGAGNRSPIFTDVGRELVWIHSVNVLQRNLSKSCQMKPFSQTSVCAIRALAMEVTAFLPDEGKLRPWQGSRLTGSGMSTIPSLPPNRADDPSLGNPLLRFEHMGCGWLGVIMEWGGVIVEDDPHIESKAWLALAEEEGKRPPATFILKRVEGMKNEHAISEVLCWSRDPVNVRRLASRKEELYQEMQGGFYQLRPGSQEFLVTLKKHKIPIALASTRPRKYLEKEIEAVGMQGFFDVVVAAEDVYRGKPDPEMVMYAAQLLNIISERCILFGNSNSSVEASHDICMKCVGVAGKHPVFELGAADMVVRRLDDLSLVDLKNLADLDSPEFQPPEPEPELELEEDEDEDRFTAVAVQDIW

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
297	25		75		0.996473
308		83		16	0.994512
368		66	33		1.0
611		14		85	0.993533
614		14		85	0.993533
615		85	14		0.993533
618		83		16	0.994512
619	83			16	0.994512
620	83		16		0.994512
621			16	83	0.994512
622		16		83	0.994512
624			16	83	0.994512
629	16		83		0.994512
1045	90		10		0.90298
1047	87		12		0.992554
1077	88			11	0.923564
1078		11	88		0.923564
1084	88			11	0.923564
1085			11	88	0.923564
1087		11		88	0.923564
1093	11			88	0.923564
1094	88	11			0.923564
1095			88	11	0.923564
1096		11	88		0.923564
1097	11		88		0.923564
1162	12		87		0.992554
1165		12	87		0.992554
1171	87		12		0.992554
1174			12	87	0.992554
1178	12	87			0.992554
1183		12		87	0.992554
1184		12		87	0.992554
1247	12	87			0.992554
1248		87		12	0.992554
1249	87		12		0.992554
1250	87		12		0.992554
1459		13		86	0.999973
1462		13	86		0.999973
1467	13			86	0.999973
1468		13		86	0.999973
1469		13	86		0.999973
1470		86		13	0.999973
1475	86			13	0.999973
1482		86		13	0.999973
1484	13		86		0.999973
1965		80	20		0.999996
1998	25			75	1.0
2017		20		20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain