SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4659

Length: 2022 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4659
CGTCGTGACCTTGGCTGTCACTCAACATTGTCCTGAGATTCGACATAAAATGTTTTGGTGCGTCGAGACCCTAGTTAAACTCAGTTGACCGAACGGCTGATGCGTTGTGTGGCCATGGTTGCCCTCATTCATATTTATTTGTTGTGACCTTGGCTTTCACTGCACGAGCATCAAATATGCTGGCATCTCAGAGAATCCCAAAGGGAGTACAAATGCCAAAGTCATGAAGACAGCATACCGGGCTGCCATTTTTCGTGTTGGCTCCGTCCTTAATTCACAGCAATACCCAATTCCTTTCACAATCCCACATAAATCATATTGCGCCTCTCCACAGTCCTCCGAGCACTCATCAATGGCTTCCAGCGAATCCCATGATAAAATTATCTCTGTAGTTTCAACATTTACCTCGCCATTCGAGGACTCCCCATCGATAGACGCAGGGTCGTCCCTCCGCAAGCCTCTCAGCCTGTGGCCAGGTATGTACCACTCACCCGTCACGAATGCTCTGTGGCACGCGAGGTCCAGCATATTCGAAAGACTGTTGGATCCGTCTGCGGATGCGCCCCCACAGAGCCAATTGCTATCCAAAACGCCCAGCCAGAGCCGCACCAGTATACTCTACAACTTCTCAAGCGATTACATACTACGGGAACAGTACAGGGATCCGTGGAACGAGGTCAGGATTGGAAAGCTCTTGGAGGATTTAGATGCACTGGCGGGAACCATAGCTTTTAAGCACTGTGCTGATGAGGACAGCATAACAAGACCATTGTTACTAGTGACAGCATCAGTTGACAAGATGGTGTTGAAAAAGCCAATTCATGTAGATACTGACCTGAAAGTTGCTGGTGCTGTTACTTGGGTTGGCCGATCATCACTCGAGATTCAAATGATGATAACTCAGCCACCTGAAGGGGAGACTGAAACAGGGGACTCTGTTGCTCTAACTGCAAACTTTATGTTTGTTGCACGAGACTCAATAACAGGAAAATCGGCCCCTGTTAACCGGCTTGTAGCACAAACAGAACAAGAAAAGGCATTGCAAGCAGAAGGTGAAGCAAGAGATATGAGAAGGAAGAAAGAGAGACAAAGACAGGGAAAGGAGTTTGAGGAAGGCCATAGGCTGCATTGCAATGGTGACAGACTGAAAGCTTTGTTGAGAGAAGGTCGTGTGTTGTGTGATATGCCTGCTTTAGCAGACAGGGACAGCATGCTGATAAAAGACACAGGGCTTGAAAATGCACTAATTTGCCAGCCACAGCAACGCAACTTACATGGCCGAATCTTTGGAGGGTTTCTGATGCATCGTGCTTTTGAGTTGGCATTTTCTACATGTTATGCTTTTGTTGGGCACACTCCTTGCTTTTTGGAAGTTGATCATGTTGATTTTCTGAGACCAGTTGATGTTGGGGACTTCCTTCGTTTCAAATCCTGTGTCCTATTCACACAACTAGACGATCCAAAGCGACCACTCATAGATGTTGAAGTCGTTGCACATGTCATCAGACCTGAACTAAGAAGTAGTGAGGTCTCCAATACTTTCTATTTCTCATTCACAGTACACCCTGATGCTCTGGAAGGTGGGTTAAAGATCCGTAAAGTTTTGCCTGCAACAGACGAGGAAGCTCGTCATGTCCTTGAACGTCTTGATGCAGAAACTTCGGACTAAACCTGGACAATTTATTTGACCTCTAACTAACTTTAAGGCATTTTATTTTATCTTCATCTTCAGTTTAGTCATAACCTTACCCATAATGCTTTTCTCTCTTACGTACATATATGGTTGAAGTAACAAAATGGGAAGATGCGATGATATATAACATTGTTCCACACTCGGTGCCTATATAAAATGCACAAGGGTCGTGAAGTTGGTGTCATATCCTTGCATGTTTACATTGGGATCTATCAATTTTGAAATCAAATGGGTTTGAAATCTGTGATTCATAGCATAGTTTTGAAAAGTGGAACTGGGTTTTGAATTGGGCCGCTTATCAAACCGGGGTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene4659

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-CoA thioesterase, putative n=1 Tax=Ricinus communis RepID=B9T2I4_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	thioesterase family protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV70

Fln msg: your sequence is longer than subject: 482 - 396

Fln protein: MKTAYRAAIFRVGSVLNSQQYPIPFTIPHKSYCASPQSSEHSSMASSESHDKIISVVSTFTSPFEDSPSIDAGSSLRKPLSLWPGMYHSPVTNALWHARSSIFERLLDPSADAPPQSQLLSKTPSQSRTSILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTIAFKHCADEDSITRPLLLVTASVDKMVLKKPIHVDTDLKVAGAVTWVGRSSLEIQMMITQPPEGETETGDSVALTANFMFVARDSITGKSAPVNRLVAQTEQEKALQAEGEARDMRRKKERQRQGKEFEEGHRLHCNGDRLKALLREGRVLCDMPALADRDSMLIKDTGLENALICQPQQRNLHGRIFGGFLMHRAFELAFSTCYAFVGHTPCFLEVDHVDFLRPVDVGDFLRFKSCVLFTQLDDPKRPLIDVEVVAHVIRPELRSSEVSNTFYFSFTVHPDALEGGLKIRKVLPATDEEARHVLERLDAETSD*

Protein Length: 483

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTGTCCTGAGATTCGACATAAAATGTTTTGGTGCGTCGAGACCCTAGTTAAACTCAGTTGACCGAACGGCTGATGCGTTGTGTGGCCATGGTTGCCCTCATTCATATTTATTTGTTGTGACCTTGGCTTTCACTGCACGAGCATCAAATATGCTGGCATCTCAGAGAATCCCAAAGGGAGTACAAATGCCAAAGTC_-_ATGAAGACAGCATACCGGGCTGCCATTTTTCGTGTTGGCTCCGTCCTTAATTCACAGCAATACCCAATTCCTTTCACAATCCCACATAAATCATATTGCGCCTCTCCACAGTCCTCCGAGCACTCATCAATGGCTTCCAGCGAATCCCATGATAAAATTATCTCTGTAGTTTCAACATTTACCTCGCCATTCGAGGACTCCCCATCGATAGACGCAGGGTCGTCCCTCCGCAAGCCTCTCAGCCTGTGGCCAGGTATGTACCACTCACCCGTCACGAATGCTCTGTGGCACGCGAGGTCCAGCATATTCGAAAGACTGTTGGATCCGTCTGCGGATGCGCCCCCACAGAGCCAATTGCTATCCAAAACGCCCAGCCAGAGCCGCACCAGTATACTCTACAACTTCTCAAGCGATTACATACTACGGGAACAGTACAGGGATCCGTGGAACGAGGTCAGGATTGGAAAGCTCTTGGAGGATTTAGATGCACTGGCGGGAACCATAGCTTTTAAGCACTGTGCTGATGAGGACAGCATAACAAGACCATTGTTACTAGTGACAGCATCAGTTGACAAGATGGTGTTGAAAAAGCCAATTCATGTAGATACTGACCTGAAAGTTGCTGGTGCTGTTACTTGGGTTGGCCGATCATCACTCGAGATTCAAATGATGATAACTCAGCCACCTGAAGGGGAGACTGAAACAGGGGACTCTGTTGCTCTAACTGCAAACTTTATGTTTGTTGCACGAGACTCAATAACAGGAAAATCGGCCCCTGTTAACCGGCTTGTAGCACAAACAGAACAAGAAAAGGCATTGCAAGCAGAAGGTGAAGCAAGAGATATGAGAAGGAAGAAAGAGAGACAAAGACAGGGAAAGGAGTTTGAGGAAGGCCATAGGCTGCATTGCAATGGTGACAGACTGAAAGCTTTGTTGAGAGAAGGTCGTGTGTTGTGTGATATGCCTGCTTTAGCAGACAGGGACAGCATGCTGATAAAAGACACAGGGCTTGAAAATGCACTAATTTGCCAGCCACAGCAACGCAACTTACATGGCCGAATCTTTGGAGGGTTTCTGATGCATCGTGCTTTTGAGTTGGCATTTTCTACATGTTATGCTTTTGTTGGGCACACTCCTTGCTTTTTGGAAGTTGATCATGTTGATTTTCTGAGACCAGTTGATGTTGGGGACTTCCTTCGTTTCAAATCCTGTGTCCTATTCACACAACTAGACGATCCAAAGCGACCACTCATAGATGTTGAAGTCGTTGCACATGTCATCAGACCTGAACTAAGAAGTAGTGAGGTCTCCAATACTTTCTATTTCTCATTCACAGTACACCCTGATGCTCTGGAAGGTGGGTTAAAGATCCGTAAAGTTTTGCCTGCAACAGACGAGGAAGCTCGTCATGTCCTTGAACGTCTTGATGCAGAAACTTCGGACTAA___ACCTGGACAATTTATTTGACCTCTAACTAACTTTAAGGCATTTTATTTTATCTTCATCTTCAGTTTAGTCATAACCTTACCCATAATGCTTTTCTCTCTTACGTACATATATGGTTGAAGTAACAAAATGGGAAGATGCGATGATATATAACATTGTTCCACACTCGGTGCCTATATAAAATGCACAAGGGTCGTGAAGTTGGTGTCATATCCTTGCATGTTTACATTGGGATCTATCAATTTTGAAATCAAATGGGTTTGAAATCTGTGATTCATAGCATAGTTTTGAAAAGTGGAACTGGGTTTTGAATTGGGCCGCTTATCAAACCGGGGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene4659___MYHSPVTNALWHARSSIFERLLDPSADAPPQSQLLSKTPSQSRTSILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTIAFKHCADEDSITRPLLLVTASVDKMVLKKPIHVDTDLKVAGAVTWVGRSSLEIQMMITQPPEGETETGDSVALTANFMFVARDSITGKSAPVNRLVAQTEQEKALQAEGEARDMXXXXXXXXXXXXXXXXHRLHCNGDRLKALLREGRVLCDMPALADRDSMLIKDTGLENALICQPQQRNLHGRIFGGFLMHRAFELAFSTCYAFVGHTPCFLEVDHVDFLRPVDVGDFLRFKSCVLFTQLDDPKRPLIDVEVVAHVIRPELRSSEVSNTFYFSFTVHPDALEGGLKIRKVLPATDEEARHVLERLDAE
A9NV70______________MYHSPVTNALWHARSSIFERLLDPSVDAPPQSQLLSKTPSQSRTSILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTIAVKHCSDDDSTTRPLLLVTASVDKMVLKKPIRVDTDLKVAGAVTWVGRSSLEIQMVITQPPEGETETGDSVALTANFMFVARDSKTGKSALINRLLPQTEQEKALLAEGEARDMRRKKERQRQGKEFEEGHRLHGDGDRLKALLREGRVLCDMPALADRDSMLIKDTRLENALICQPQQRNLHGRIFGGFLMHRASELAFSTCYAFVGHTPLFLEVDHVDFLRPVDVGDFLRFKSCVLFTQVDDPKRPLIDIEVVAHVTRPELRSSEVSNTFYFTFTVHPVALEGGLKIRKVLPATEEEARHVLERIDAE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
896		16		83	0.994512
1036	66			33	0.997452
1037	66		33		0.997452
1038	66		33		0.997452
1041	33		33		0.997753
1055	75			25	0.996473
1058			25	75	0.996473
1138	80		20		0.995493
1472	91		8		0.999766
1490	88	11			1.0
1496			7	88	0.998862
1497	7		88		0.998862
1499	92			7	0.999602
1500		88	7		0.998862
1501	92	7			0.999602
1755		94		5	0.998397
1763	5			94	0.998397
1765			5	94	0.998397

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain