SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4657

Length: 1155 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4657

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoethanolamine/phosphocholine phosphatase, putative (EC:3.1.3.75)	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	phosphatase	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	HAD-superfamily hydrolase, subfamily IB, PSPase-like	IPR006383	-	68%
Blast2go	Pyridoxal phosphate phosphatase-related	IPR006384	-	68%
Blast2go	HAD-like domain	IPR023214	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLR1

Fln msg: your sequence is longer than subject: 313 - 236

Fln protein: MESNSDTVIVFDFDLTIIDCDSDPWVIEQLGATQLFRSLLPTLPWNTLMDKMMEELHQQGKTISDIEESLKTIPLHPEMIRAIEFAFSLGCDLRIVSDANLFFITTILQAHGLLEYFTEIKTNPAFVDETGRLRIKPFHPFTEGPPHGCTLCPPNMCKGSIINEMIQNSFVEGESNKMIQKSFVEGESDEMIQNSLEGESINKKQFIYLGDGNGDFCPTLKLRDGDHILPRKEYPLWKLIQKNCDLVKAEVHGWSNAKDIEDLFVKLLKDSFCSSDVCEGYSDVCEGSYEEICAANLGCEEMSAIEAYSNEL*

Protein Length: 314

Fln nts: ATGGGGATGCTTCTTCATCTTGAATTATAAGAAGTCTCCCCTTCGTCCATGGGGACAGCAAATCTCTCCCTTGGCTTCTTTCTTGTTGAAACAGGACAATTTGCTCC_-_ATGGAGAGTAACAGTGATACTGTGATTGTGTTTGATTTTGATCTCACCATCATTGACTGTGACAGTGATCCATGGGTTATTGAGCAGCTTGGAGCCACTCAGCTCTTCCGGTCTCTGCTCCCCACTCTTCCCTGGAATACTCTCATGGATAAAATGATGGAGGAGCTGCACCAGCAGGGGAAGACAATAAGCGACATTGAAGAGAGCTTGAAGACCATACCTCTCCATCCAGAAATGATAAGAGCAATCGAATTTGCCTTCTCCTTGGGGTGTGATCTTCGAATTGTGAGCGATGCTAATCTGTTCTTCATAACGACTATTCTTCAAGCCCATGGCCTCCTTGAATACTTCACTGAAATTAAGACAAACCCAGCGTTTGTTGATGAGACTGGTAGATTAAGGATAAAGCCGTTTCATCCATTTACTGAAGGCCCTCCTCATGGCTGCACCCTCTGCCCTCCCAATATGTGTAAGGGATCAATAATAAATGAAATGATACAAAACTCTTTTGTTGAAGGAGAATCAAATAAGATGATACAAAAGTCCTTTGTTGAAGGAGAGTCGGATGAGATGATACAAAATTCCTTGGAAGGAGAATCAATAAATAAGAAGCAATTTATTTATTTGGGAGATGGAAATGGAGATTTCTGCCCTACCTTGAAGTTGAGGGATGGTGATCACATTCTACCCAGAAAAGAATACCCACTGTGGAAGCTCATTCAGAAGAATTGTGATCTAGTTAAGGCCGAAGTGCATGGGTGGTCAAATGCAAAGGATATTGAAGATCTATTTGTCAAACTACTAAAGGATTCATTTTGTTCTTCTGATGTTTGTGAGGGATATTCTGATGTTTGTGAGGGATCTTATGAAGAAATTTGTGCTGCCAATTTAGGATGTGAGGAAATGTCTGCTATAGAAGCTTATTCAAATGAACTGTGA___GCTCATTGAGGCTCAAGTACACGGATGGTTGAATGCCAATGCTATTGAAGACTTTATACAAGATGTTTAAGCCTTCTTAACCATTAATGCAAATTCCCCTTACATGCCA

Fln Alignment:

sp_v1.1_unigene4657___DTVIVFDFDLTIIDCDSDPWVIEQLGATQLFRSLLPTLPWNTLMDKMMEELHQQGKTISDIEESLKTIPLHPEMIRAIEFAFSLGCDLRIVSDANLFFITTILQAHGLLEYFTEIKTNPAFVDETGRLRIKPFHPFTEGPPHGCTLCPPNMCKGSIINEMIQNSFVEGESNKMIQKSFVEGESDEMIQNSLEGESINKKQFIYLGDGNGDFCPTLKLRDGDHILPRKEYPLWKLIQKNCDLVKAEVHGWSNAKDIEDLFVKLL
A9NLR1______________DTVIMFDFDHTLIDCNSDPWVVNQLGATQLMDSLIKVLPWTSLMDRMMSELHQQGKTVSDIEQSLKTVPICLEMIRAIKSAHSLGCDLRIVSDANSFYIKTILKNYDLLQYFSEIHTNPASVDNDGRLRIFPYHSYTVA-SHGCELCPPNMCKGAIV-DGIQRCF-PPESN---------------------------KRFIYLGDGRGDFCPSLKLGSEDHVLARQEYPLWKLLGQNPDLVKAQVHSWSNAKDVEDCLCKLL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
632	75		25		1.0
671	20		80		0.999996
755		80		20	0.995493
797		66		33	0.997452
865	40		60		1.0
1041		75		25	0.996473
1065	75		25		0.996473
1103	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain