SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4655

Length: 1063 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4655

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	at3g53030 f8j2_200	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	81%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	81%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	81%
Blast2go	Protein kinase-like domain	IPR011009	-	81%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	81%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Distance to subject end: 105 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 305 - 459

Fln protein: MEKAEDLAGMSSRRPEEEEEEAEAHSESSDYTSSEDEGTDDYRRGGYHAVRIGDSFKGGRYVVQSKLGWGHFSTVWLAWDTQNNRYVALKVQKSAQHYTEAAMDEIAILKQIAEGDVDDEKCVVKLLDHFKHTGPNGQHVCMVFEFLGDNLLTLIKYYDYRGMPLHMVKEICFSVLVGLDYLHRQLSIIHTDLKPENILLLSTIDPAKDPRKSGTSPLLFPNKNKSIFPLNSSLLKEGKSANGGLSRNQKKKLRRNAKKAAKACVNSVDDPENGLAPENRKDTIESQGGKSDGNSQGNLGENASS

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTGGTTAGAGAGGGTAAAGAGGAAAACGTTGCGGAGAGAGCGCCCGACGGATCTTTTGCGGCAACAAAGCCATTCATTTTGCATCATTTCGAGTTTTTGGTTGGTTTTTTGATCGGCCAAG_-_ATGGAGAAAGCAGAAGACTTAGCAGGGATGAGCAGCAGGAGACCCGAGGAGGAAGAAGAGGAGGCTGAGGCTCACAGTGAGAGTAGCGATTACACCTCGTCTGAAGACGAGGGCACGGACGATTACAGGCGAGGAGGATACCACGCTGTGCGGATTGGCGACTCTTTCAAGGGAGGGAGATATGTTGTCCAGTCGAAGCTGGGATGGGGTCATTTCTCCACTGTCTGGCTTGCCTGGGATACCCAAAACAATAGATATGTGGCATTGAAGGTACAGAAGAGTGCACAGCATTACACAGAGGCAGCCATGGATGAGATTGCAATACTGAAGCAAATAGCAGAAGGGGATGTAGATGACGAGAAGTGTGTGGTTAAATTGCTGGATCATTTCAAGCACACTGGACCGAATGGGCAGCACGTGTGTATGGTTTTTGAGTTCTTAGGAGACAATTTGTTGACTCTTATCAAGTATTATGACTACAGGGGCATGCCCCTGCACATGGTGAAGGAAATTTGCTTTTCTGTATTGGTAGGATTGGACTACTTGCACCGGCAGCTTTCTATTATTCACACGGATCTCAAGCCTGAGAACATTCTCCTCTTGTCTACAATTGACCCTGCCAAAGATCCTAGGAAATCTGGTACTTCACCCCTGCTTTTCCCTAACAAAAATAAGTCCATATTCCCTTTAAATTCTTCCCTCCTTAAGGAGGGTAAAAGTGCAAATGGAGGGTTGTCAAGGAATCAGAAGAAGAAATTGAGACGCAATGCCAAGAAAGCAGCGAAGGCTTGTGTAAATAGTGTTGATGACCCAGAAAATGGTCTTGCACCTGAAAACCGGAAAGATACCATTGAATCTCAAGGGGGGAAATCAGATGGCAATTCTCAAGGCAACCTAGGTGAAAATGCTTCAAGC

Fln Alignment:

sp_v1.1_unigene4655___RGGYHAVRIGDSFKGGRYVVQSKLGWGHFSTVWLAWDTQNNRYVALKVQKSAQHYTEAAMDEIAILKQIAEGDVDDEKCVVKLLDHFKHTGPNGQHVCMVFEFLGDNLLTLIKYYDYRGMPLHMVKEICFSVLVGLDYLHRQLSIIHTDLKPENILLLST
B8LL66______________KDGHYMFALGDNLTP-RYKILNKIGEGTFGQVLECWDRETREFVAVKIVRGLQRYREAAMIEIDVLREVAKYDRSGTRC-VQMRNWFDYR----NHVCIVFEKLGPSLYDFLRKNNYHPFPIDIVRELGKQLLESVAYMH-HLHLIHTDLKPENILFASS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
571		33		66	1.0
574	66	33			1.0
575			33	66	1.0
576			66	33	1.0
578	33			50	1.0
579		33		66	1.0
580		33		66	1.0
584	50		16		1.0
586		33		66	1.0
588		66	33		1.0
590		33		66	1.0
593		33	66		1.0
594	66			33	1.0
595		33	66		1.0
798	80		20		0.995493
951		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain