SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4648

Length: 1250 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4648 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] dbj\|BAD44643.1\| neutral invertase like protein [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	91%
Blast2go	protein	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant neutral invertase	IPR006937	-	0.0	93%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	0.0	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RY26

Fln msg: Overlapping hits, possible frame ERROR between 175 and 163, your sequence is shorter than subject: 312 - 562

Fln protein: TLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCARILLKPxxxxxxFIERIDKRLHALSYHMRNYFWLDFEQLNNIYRYKTEEYSHTAVNKFNVIPDSITDWVFDFMPIRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSTRIMDLIEERWEDLVGEMPLKVSYPALEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLFTAACIKTGRPQMARRAIELAETRLSKDGWPEYYDGKLGRYIGKQSRKWQTWSVAGYLVAKMMLEDPSHLGMIALEEDKKMKPSLTRSASWIM*

Protein Length: 313

Fln nts: GACATTGTGCCTCTCTGAAGGCTTCGACACTTTTCCCACTCTCCTCTGTGCAGATGGATGCTGTATGGTTGATCGCAGAATGGGCATTTATGGTTATCCCATTGAAATTCAAGCCTTGTTCTTCATGGCACTAAGGTGTGCCCGGATACTCCTTAAACCAxxxxxxxxxxxxxxxxxxTTCATAGAGCGAATTGATAAAAGGCTGCATGCATTAAGTTATCACATGCGTAACTATTTCTGGTTAGACTTTGAGCAGTTGAACAACATATATCGATACAAGACTGAGGAATATTCTCACACTGCTGTAAATAAATTCAATGTTATTCCTGATTCCATTACAGATTGGGTATTTGATTTCATGCCAATTAGAGGAGGTTATTTTATTGGAAATGTCAGCCCAGCTCGGATGGACTTTAGGTGGTTTTGTTTGGGTAATTGTATTGCAATTTTGTCATCCTTGGCAACACCTGAACAGTCTACAAGAATAATGGATCTTATTGAAGAGCGGTGGGAAGATCTGGTTGGAGAGATGCCTCTCAAGGTTTCATACCCTGCCTTAGAGGGTCATGAATGGCGAATAGTAACAGGTTGCGATCCAAAGAACACAAGATGGAGTTACCACAATGGAGGATCTTGGCCAGTGCTTTTGTGGCTATTCACTGCAGCCTGTATTAAAACGGGAAGGCCGCAAATGGCCAGAAGGGCCATTGAACTTGCTGAGACCAGACTATCTAAGGATGGCTGGCCTGAATATTATGATGGGAAGCTTGGACGATATATTGGAAAGCAGTCTCGAAAGTGGCAAACCTGGTCAGTTGCTGGATATCTTGTAGCCAAGATGATGCTTGAAGATCCATCCCATTTAGGTATGATAGCATTGGAAGAGGACAAGAAGATGAAGCCGTCCCTCACTCGATCAGCTTCTTGGATAATGTAAAATGGGGAAATCCGCCACTCTTGAATGTTTCGTCACTTCTGTATGACAAATGAGGCAATTCATAGCACATGTTGTGCAAGCATTCTCTAGCATTTTCATTCTGGTTGGTCTTAGTCGGGCCAAACTAGAAACTGCAAATAGCTCCTCCTATAATCAGATCAACTGGACAAAGCACAGTATCTTATGATGCGTCAGTCTCGTGGTATTTCAGCTCGTGTCTCATTTTCATTTCAAATAATCCCATATTCCAAGTTTTTCTGGAGTGTGTAATGGAACCAAGCAAATGTAAATGTGACTGTAATCAGTTTAATCGC

Fln Alignment:

sp_v1.1_unigene4648___TLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCARILLKPExxxxEFIERIDKRLHALSYHMRNYFWLDFEQLNNIYRYKTEEYSHTAVNKFNVIPDSITDWVFDFMPIRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSTRIMDLIEERWEDLVGEMPLKVSYPALEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLFTAACIKTGRPQMARRAIELAETRLSKDGWPEYYDGKLGRYIGKQSRKWQTWSVAGYLVAKMMLEDPSHLGMIALEEDKKMKPSLTRSASW
D8RY26______________TLCLSEGFDTFPTLLCADGCCMIDRRMGIYGYPIEIQALFFMALRCAKFLLKPExxxxEFIERIDKRLHALRYHLRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMKGGYFIGNVSPARMDFRWFTIGNCVAILSSLTTPEQATAIMDLIEERWDDLIGEMPLKVTYPALEGHEWKIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEIAEARLSKDGWPEYYDGKTGRYIGKQARKLQTWSIAGYLVAKMMLEDPSHLGMVSLEEDKKTKPYLTRSNSW

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
103	33		66		0.997452
465		66		33	1.0
618	90			10	0.90298
622		90		10	0.90298
623		90		10	0.90298
625		90	10		0.90298
630			90	10	0.90298
632		10	90		0.90298
633			90	10	0.90298
635	90			10	0.90298
636	90		10		0.90298
637		90		10	0.90298
639		90		10	0.90298
641	90			10	0.90298
643		90		10	0.90298
646		10	90		0.90298
648			90	10	0.90298
649		10		90	0.90298
650		10		90	0.90298
654		10		90	0.90298
655		10	90		0.90298
656		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain