SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4635

Length: 1733 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4635

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-activating enzyme E1 domain-containing protein, putative; K12164 ubiquitin-like modifier-activating enzyme 5	-	-	64%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	thif family protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	78%
Blast2go	Molybdenum cofactor biosynthesis, MoeB	IPR009036	-	78%
Blast2go	NAD(P)-binding domain	IPR016040	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O23034

Fln msg: your sequence is longer than subject: 467 - 431

Fln protein: MIFSPLLGCIALVNTYSGSSDETAALALTGMEEVKELLDTLEGLKSALSLSPLDNKIQSQLTKLQHHAERISTSVKGVAMRRPKVKDMSSEVVDSNPYSRLMALKRMGIVNNYERIREFSVSIVGIGGVGSVAAEMLARCGIGRLLLYDYDTVELANMNRLFFRPEQVGMTKTDAAAQTLAEINPDVLIESYTLNITTVKGFEKFMETLTNQVIESTRGRQSGVDLVLSCVDNYEARMVVNQACNELNQIWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKRDGVCAASLPTTMGVVAGLLVQSTLKYLLQFGEVSKYLGYNALKDYFPTMEMLPNPQCSNSACQDRQREYIRLKPAKDAAAKARVEAEAEAACASNLPVHDDNEWNISVVDDEKSEATIRSTPSDELPDGLVREFPEANVLEKPALSEESIVVHPICDLDNLRKQLEALNAD*

Protein Length: 468

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGATTTTTTCCCCGTTGTTAGGTTGCATAGCGCTAGTTAACACGTACTCGGGATCATCAGACGAAACAGCAGCATTAGCATTAACCGGCATGGAGGAAGTGAAGGAGCTACTGGATACTTTGGAAGGCCTTAAATCAGCGTTATCATTGTCACCATTAGATAACAAAATTCAATCTCAGCTTACCAAGTTGCAACATCATGCAGAGCGGATTTCCACGAGTGTAAAAGGTGTGGCTATGCGACGCCCAAAAGTGAAGGATATGAGCTCTGAAGTAGTGGACAGTAATCCATACAGTAGACTTATGGCATTGAAGCGAATGGGTATTGTGAACAACTATGAGCGGATTCGAGAATTCTCAGTTTCCATTGTTGGTATTGGTGGTGTAGGAAGTGTTGCAGCTGAAATGCTTGCAAGATGTGGAATTGGGCGCCTTTTGCTGTATGACTATGACACAGTGGAATTGGCAAATATGAATCGTCTCTTCTTCCGGCCAGAGCAGGTTGGCATGACTAAGACAGATGCTGCTGCTCAGACACTTGCTGAAATTAATCCGGATGTTTTGATTGAGAGCTACACATTGAATATTACAACAGTGAAGGGTTTTGAGAAATTCATGGAGACTCTGACCAACCAAGTTATTGAATCCACAAGAGGTCGACAAAGTGGAGTTGATTTGGTGTTAAGCTGTGTAGATAACTATGAAGCTCGCATGGTTGTGAATCAGGCTTGCAACGAGCTAAACCAAATATGGATGGAGTCAGGTGTGTCAGAGGATGCTGTATCTGGGCATATTCAATTGCTCATTCCGGGAGAAACAGCTTGTTTTGCATGTGCTCCACCACTGGTAGTTGCATCTGGAGTAGATGAGCGTACTCTCAAGCGTGATGGTGTTTGTGCAGCTTCATTACCCACCACAATGGGAGTTGTGGCTGGTCTTTTGGTTCAAAGTACTCTCAAGTACTTGCTTCAATTTGGTGAAGTTTCCAAATACTTGGGATACAATGCTCTCAAGGACTATTTCCCAACCATGGAGATGTTACCTAATCCTCAGTGTTCTAATTCCGCTTGTCAAGACCGTCAGCGAGAATATATCCGGTTGAAGCCAGCAAAGGATGCTGCAGCTAAGGCTAGGGTAGAAGCAGAAGCAGAAGCAGCCTGTGCATCTAATCTTCCAGTTCACGATGATAATGAGTGGAATATAAGTGTCGTTGATGATGAAAAATCAGAGGCTACAATTCGAAGTACCCCTTCAGATGAGCTTCCAGACGGGCTTGTGCGTGAGTTTCCTGAGGCAAATGTGCTCGAGAAGCCTGCTTTATCAGAGGAATCAATAGTTGTGCACCCAATTTGTGACCTTGATAATCTTCGGAAGCAGTTAGAGGCTCTTAATGCGGATTAA___TGTCTGTTATAACGATGGTTGAATAAGCTAGTATTCGATTGCTTGTACATGGGATTCATTTTTCATATTTGTTGGTATCAACTGAAAACAGTTCAAAGCTTGATATTGTAATCATCAAGCAAAATGCTTGATTGTAACAAGGATACAAGAAAAATCGGACTTCTATTTTAAAAAAGAAATGTCAGCACATTTTATATTCTCGCATCATAATTAACATAAATCATCATTAAGTACATTTATTTCGAGAGATGTGTGATTTTCATTTTCGTATAGAGCATCTTCCATTGCTAAGAGCAACTCAATTATGTT

Fln Alignment:

sp_v1.1_unigene4635___KELLDTLEGLKSALSLSPLDNKIQSQLTKLQHHAERISTSVKGVAMRRPKVKDMSSEVVDSNPYSRLMALKRMGIVNNYERIREFXXXXXXXXXXXXXAAEMLARCGIGRLLLYDYDTVELANMNRLFFRPEQVGMTKTDAAAQTLAEINPDVLIESYTLNITTVKGFEKFMETLTNQVIESTRGRQSGVDLVLSCVDNYEARMVVNQACNELNQIWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKRDGVCAASLPTTMGVVAGLLVQSTLKYLLQFGEVSKYLGYNALKDYFPTMEMLPNPQCSNSACQDRQREYIRLXXXXXXXXXXXXXXXXXXXXXSNLPVHDDNEWNISVVDDEKSEATIR-STPSDELPDGLVREFPEANVLEKP-ALSEESIVVHPICDLDNLRKQLEALNA
O23034______________KALLDDLDVLEKSLSDPALINKLRS-------HVENLATLSKCNPHRRSKVKELSSEVVDSNPYSRLMALQRMGIVDNYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDTVELANMNRLFFRPDQVGMTKTDAAVQTLAEINPDVVLESFTMNITTVQGFETFTSSLTNKSFCPSKEGGSGVDLVLSCVDNYEARMAVNQACNELRQTWMESGVSEDAVSGHIQLLVPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGLLVQNSLKFLLNFGEVSPYLGYNSLKDFFPTMKMRPNPQCSNVACLERQKEYM-LAKPERDAAAKAKMEADASTTIDEGPLHDDNEWNISVVDDENEKDTTKAASSSDTLPEGLTRELPVADEYEKAIAIASGSGETEEEDDLEDLKKQLEALNA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
929	83		16		0.994512
1259	87			12	0.999964
1293			82	17	1.0
1301	13	3	82		1.0
1303		6	82	10	1.0
1304	3	10		86	1.0
1305	10	3	86		1.0
1369	12	88			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1160	1179	AGAAGC AGAAGC AGAAGC AG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain