SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4631

Length: 1137 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4631

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG5143 Synaptobrevin/VAMP-like protein	-	-	5.0e-09	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	vesicle-associated membrane	-	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUI3

Fln msg:

Fln protein: MVDHSLIYSFVSRGTVILAEYTEFTGNFPTIAFQCLQKLPATSNKFTFDCQHHTFNYVVEDGFTYCVVADESAGRQVPMAFLERIKDEFKKTYSDGRAEVAIANGLHQEFGPKLKEHMDYCAQHPEQINKLAKTKAQVAEVKGVMMDNIEKILDRGEKIELMVDKTEQLQFQAQDFQNQGAKIRRKMWFRNTKVKLICLSFLLFVVLMIWISLCRGFKCHV*

Protein Length: 223

Fln nts: ATGGGGATGCATGGGGAAGCCAACGTTACATACATAACTACAAACCGTAACGCATGCCTGGAGCAGTGTCCATAACGTCAGTACGGTCGTGATCAGCAGGAAACTTTTTCCGTGCTCCTTCTTCTTGTTTGCTTCGGGATTCGATATCCTGACCACTTTACTCATCAGCCCGCTGAATTCTTCTGTAGACTTGCTCTTTTCCTGCTATTTTGCTGTTGTTGAGGGCCAGCACAGGCAACGGCCTCGTTCAAAATCGGGCCAAAAGA_-_ATGGTCGATCACTCGCTCATTTACAGTTTTGTTTCGAGAGGGACGGTCATATTGGCCGAGTACACGGAATTTACTGGGAATTTTCCCACCATAGCTTTCCAGTGCCTCCAGAAGCTCCCGGCCACCAGCAATAAGTTCACATTTGACTGTCAACACCACACCTTTAATTATGTCGTTGAAGATGGATTTACATATTGTGTCGTGGCAGATGAATCAGCTGGAAGACAAGTACCGATGGCCTTCCTGGAGCGCATTAAAGATGAGTTTAAGAAGACATATAGTGATGGAAGAGCTGAAGTAGCTATTGCCAACGGTCTTCACCAGGAATTTGGGCCAAAATTGAAAGAGCACATGGACTATTGTGCACAGCATCCAGAACAGATCAATAAGTTAGCCAAAACCAAGGCTCAGGTTGCAGAGGTCAAAGGCGTTATGATGGACAATATTGAAAAGATCCTTGATCGTGGTGAGAAGATAGAACTGATGGTTGATAAAACAGAGCAACTTCAATTCCAGGCTCAGGATTTTCAGAATCAGGGTGCTAAGATACGCAGGAAAATGTGGTTCCGGAATACAAAAGTCAAGCTAATTTGTCTTAGTTTCTTGCTTTTTGTAGTTCTCATGATATGGATCTCTCTATGCCGTGGATTCAAATGCCATGTCTGA___ACTAATAAGTTTGTAGCTATCAACACGACTAACCTTTAGTGAAGGCTATACAATGCATCTTTATTCTTCTATTGTTGTTCTCTCTACATGTAAATGGTGTTTGCTGGAAAGGTAATTCTTTTTCCTGTTTCTTCAGAGTATCACTCTTTATTTCAAAATTTGTGTTACATGGTGGTTGGGGGCAAGTGGTTTTATATTCTCATGA

Fln Alignment:

sp_v1.1_unigene4631___MVDHSLIYSFVSRGTVILAEYTEFTGNFPTIAFQCLQKLPATSNKFTFDCQHHTFNYVVEDGFTYCVVADESAGRQVPMAFLERIKDEFKKTYSDGRAEVAIANGLHQEFGPKLKEHMDYCAQHPEQINKLAKTKAQVAEVKGVMMDNIEKILDRGEKIELMVDKTEXXXXXXXXXXXXGAKIRRKMWFRNTKVKLICLSFLLFVVLMIWISLCRGFKCHV
A9NUI3______________MGEQSLIYSFVSRGTVILAEYTEFTGNFTTVAYQCLQKLPATSNKFTFDCQRHTFNYLVEDGFTYCVVADESVGRQVPIAFLERIKDEFKKRYSDGRAEVAIANGLNQEFGPKLKQHMDYCAQHPEQINKFAKTKAQVAEVKGVMMDNIEKILDRGEKIELMVDKTEQLQFQAQDFQKQGTQIRRKMWFRNMKVKLICLSFLLFVILMIWISLCRGFKCHI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
58	50	50			1.0
62	50		25		0.995533
64		75	25		0.996473
192		20		80	0.995493
255	20	80			0.995493
256		20	80		0.995493
467		90		10	0.90298
1000	10	5		85	0.999793
1059	16		83		0.994512
1085		20		80	0.995493
1088	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain