SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4582

Length: 1747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4582

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein kinase g11a	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	transferase activity	GO:0016740	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	86%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	86%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	86%
Blast2go	Protein kinase-like domain	IPR011009	-	86%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	86%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY3

Fln msg: your sequence is shorter than subject: 430 - 545

Fln protein: SSVNKPHKSNDTRWEAIRAVRMKDGILGLSHFRLLKRLGCGDIGSVYLSELSGMRCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHTLRQRQPGKHFSEQAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLVKSTSVDVDMSKKLPAYCVQPACIEPSCVQPVCVQPSCVQPTCFVPRFFPNKSKKERKPKNEVGNQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDIDLLGKRVPVASSSEKKIADVDSKSGGNYLDFDFF*

Protein Length: 431

Fln nts: GTAGCAGTGTGAACAAGCCTCACAAGTCAAATGATACAAGATGGGAAGCCATAAGAGCAGTTAGGATGAAAGACGGAATTTTGGGGTTGAGCCATTTTAGGTTGCTCAAGAGGCTAGGGTGTGGTGATATAGGCAGTGTTTATCTTTCTGAGCTGAGTGGTATGAGATGCTATTTTGCAATGAAGGTGATGGATAAAGGTTCTTTGGCAAGTCGAAAAAAACTTCTGAGAGCTCAAACTGAAAGGGAAATTCTACAATCTCTGGATCATCCTTTTCTTCCAACATTATACACCCACTTTGAGACAGACAAGTTCTCATGTCTGGTTATGGAGTATTGTCCAGGAGGAGATCTACACACACTTCGACAACGACAACCAGGAAAGCACTTTTCTGAACAAGCAGTTCGGTTTTATGTAGCAGAGGTTCTTCTAGCTTTGGAATACCTACATATGCTGGGAGTCGTGTACAGAGACCTCAAACCTGAAAATGTTCTTGTAAGGGAGGATGGGCATATCATGCTTTCAGATTTTGATCTCTCTCTTAGATGTGTTGTTAGTCCAACTTTGGTTAAATCAACATCTGTTGATGTTGACATGTCAAAGAAACTTCCAGCATACTGTGTCCAACCTGCTTGTATTGAACCCTCATGTGTCCAACCAGTATGTGTTCAGCCTTCTTGTGTACAACCAACTTGTTTTGTACCTCGTTTCTTCCCGAACAAATCAAAGAAAGAACGGAAACCAAAAAATGAAGTTGGTAATCAAGTGACCCCTCTTCCAGAGCTTATCGCAGAGCCTACTAGTGCCCGTTCCATGTCATTTGTGGGAACCCATGAGTATCTGGCTCCTGAGATTATTAAAGGAGAGGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGAATATTTCTATATGAACTTCTGTTTGGAAAGACACCTTTTAAGGGTTCAGGCAATCGTGCTACACTGTTCAATGTAGTAGGACAACCTCTCAGATTTCCAGAATCACCCACAGTAAGTTTTGCAGCAAGGGATTTGATCAGGGGTTTACTTGTGAAAGAGCCACAACATCGATTAGCATACAAGCGCGGTGCCACTGAAATCAAACAACACCCTTTCTTTGAGGGTGTGAACTGGGCCCTTATACGGTGTGCTACTCCTCCTGAAATTCCAAAGCCTATTGACATTGATTTGTTGGGAAAGAGAGTACCAGTGGCTTCATCAAGTGAAAAGAAAATTGCTGATGTTGATTCAAAATCTGGTGGTAATTATTTGGATTTTGATTTCTTTTGA___GTATGATGAAAATATCCAATGCTTATGTCATCGAATATGTTGAAACAGTCAACTTTTTAATCCATGTAAATGCTTCCTTTTCTGAGGAATTGCATAATTCTTCGCTGGGAAGGTCTGCAGAATGCAATTGACCTGTATTTTGAGAAGCAGGCACTTCAAGTTGATTCTTTTCATTCAGACGATGAAATTGGCATGTTTGAAATTGTATTATAGTGTTTTTATGGGAATAAGGATTGCTTCAAGTCATACTTTTCAGTAGCAGCAGGTTCTTTCTTTCAGATTGACATGGACAGAGAAATGTTGTTAAAACCTATTCATTTTCTTGAGATTATATGCTAGGTCAATTCTTGCATTAGGTAGAATCAATGATTTGAAATATACACTAGAAGTTGTAACAAGGAAATGTGTCTAGGAGCTTATGTTACACCAGTAACTTAGTTATTTGATGATCTTGG

Fln Alignment:

sp_v1.1_unigene4582___SSVNKPHKSNDTRWEAIRAVRMKDGILGLSHFRLLKRLGCGDIGSVYLSELSGMRCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHTLRQRQPGKHFSEQAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLVKSTSVDVDMSKKLPAYCVQPACIEXXXXXXXXXXXXXXXXTCFVPRFFPNKSKKERKPKNEVGNQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDIDLLGKRV-PVASSSEKKIADVDSKSGGNYLDFDFF
B8LKY3______________SSLNKPHKGNDPRWDAIQAVKVRDGFLGLSHFRLLKRVGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHSFRQQQPWKRFSESASRFYAAEILLALEYLHMMGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSASPGLDPSRRVPVYCVQPSCIE-----PSCVTPVCLQPSCFRPRFLPQRSKKIRKPKNEMANQSNLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGAGNRETLEKIAGQALRFPDSPTVSFAARDLIRGLLMKDPQHRLAFKRGATEIKQHPFFDGANWALIRSTTPPQIPKPIDLSFLTNKVTPPSARGEKKKVDSDA----NSFDFDFF

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
222	33			33	0.997753
327	14		85		0.993533
329			14	85	0.993533
330	85		14		0.993533
331			14	85	0.993533
352	83		16		0.994512
548		12	87		0.992554
549	87	12			0.992554
551			87	12	0.992554
552			12	87	0.992554
554		12		87	0.992554
558		12		87	0.992554
560		12	87		0.992554
563	12	87			0.992554
909	75		25		0.996473
910			25	75	0.996473
917	80		20		0.995493
918			20	80	0.995493
1013		85		14	0.993533
1014		85	14		0.993533
1015	85			14	0.993533
1018		14	85		0.993533
1030			87	12	0.992554
1031		87	12		0.992554
1032	87		12		0.992554
1033	87		12		0.992554
1144		87	12		0.992554
1146		12		87	0.992554
1147	87		12		0.992554
1151		12	87		0.992554
1152			87	12	0.992554
1159	87		12		0.992554
1215	87		12		0.992554
1367		41		58	1.0
1555	25		75		0.996473
1556		75	25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain