SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4574

Length: 1026 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4574

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC6 n=3 Tax=Arabidopsis thaliana RepID=Q8RVQ6_ARATH	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	exocyst complex subunit sec6	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	90%
Blast2go	pollen tube growth	GO:0009860	Biological Process	90%
Blast2go	exocyst	GO:0000145	Cellular Component	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP5

Fln msg: your sequence is shorter than subject: 326 - 756

Fln protein: GKLYTPAAIDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQRLEEPVAEIGLEPLCAMVNNNMRCYDLAMGLSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNVIFEDPGVKDLLAKLYQKEWYEGFVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVFIDHLLTQKNYIREETLERMRVDEEVFLDFFREHINLSKVEKRLQPLADLRELASSESVESFTLVYSNILQNHPDCPPEVVEKIVALREGIPKKDAREVLQECKEIYSACLANGDLPKPGFLFARLTCLTKATLRKSFKFIQ*

Protein Length: 327

Fln nts: TGGGAAGCTATATACTCCAGCAGCAATTGATTTATTTAGAATTCTTGGTGAGCAAGTGCAGATTGTGCAGGAAAATAGCACTGATGTAATGTTATATCGGATCGCGCTTTCTGTTATTCAGGTAATGGTAGATTTTCAGGCAGCTGAGAGGCAAAGGCTAGAGGAGCCAGTTGCAGAAATTGGGTTGGAACCATTATGTGCAATGGTTAACAACAATATGCGTTGTTATGATCTGGCTATGGGCCTCAGTAGTAGTACGATGGAAGCCTTGACTCCTTATTATGCCGAACAGGTTAATTTTGAAGATACTTGCAAAGGCTTCCTTGAAGTAGCAAAGGAAGCGGTGCACCAGACTGTTAATGTAATATTTGAGGATCCTGGTGTCAAGGATTTGCTTGCAAAACTCTACCAAAAAGAGTGGTATGAAGGCTTTGTAACTGAATACTTGGTTGCAACATTTGGAGACTACTTTACTGATGTGAAGTTATATATAGAAGAGAGGTCCTTTAGGAGATTTGTTGAAGCTTGCTTAGAAGAGGCAGTTGTAGTTTTCATCGATCATCTGCTTACCCAGAAAAATTACATCAGGGAGGAAACGCTTGAAAGAATGCGGGTTGATGAGGAAGTTTTCTTAGATTTTTTCAGGGAGCATATTAATTTATCTAAAGTAGAGAAAAGGTTGCAACCTTTGGCAGATTTACGAGAACTTGCTTCTTCTGAAAGTGTGGAATCTTTTACTCTTGTCTATTCTAACATTCTCCAGAACCACCCTGACTGCCCGCCTGAGGTTGTAGAGAAGATTGTTGCCTTACGTGAAGGAATACCAAAGAAAGATGCCCGTGAGGTACTACAAGAATGCAAGGAAATATATAGTGCTTGCCTTGCAAATGGGGATTTGCCCAAGCCCGGATTTCTCTTTGCCAGATTAACTTGTCTGACGAAGGCGACTCTTCGAAAGAGCTTTAAATTTATTCAATAA___TTATTGTCAGATACAGATTATATGATGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene4574___GKLYTPAAIDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQRLEEPVAEIGLEPLCAMVNNNMRCYDLAMGLSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNVIFEDPGVKDLLAKLYQKEWYEGFVTEYLVATFGDYFTDVKLYIEERSFRRFVEACLEEAVVVFIDHLLTQKNYIREETLERMRVDEEVFLDFFREHINLSKVEKRLQPLADLRELASSESVESFTLVYSNILQNHPDCPPEVVEKIVALREGIPKKDAREVLQECKEIYSACLANGDLPKPGFLFARLTCLTKATLRK
B8LQP5______________GKLYTPAAVDLFRILGEQVQIVQENSTDVMLYRIALSVIQVMVDFQAAERQSLEEPVAEIGLEPLCAMVNNNLRCYDLAMDLSSSTMEALTPYYAEQVNFEDTCKGFLEVAKEAVHQTVNIIFEDAGVKDLLANLYQKEWYEGTVTEYLVATFGDYFNDVKLYIEERSFRRFVEACLEEAVVVYIDHLLTQKNYIKEKTIERMRVDEEVFLDFFREYINLSKVEKRVQPLADLRELASAESVEFFTLVYSNILQNHPDCPPEVVEKVIALREGIPRKDAREILQECKEIYNTSLDNGDLPKPGFLFARLTCLPKATLRK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
84		50		50	1.0
246	33		66		1.0
675	75	25			0.996473
678	75	25			0.996473
680	75			25	0.996473
684	75	25			0.996473
685	75			25	0.996473
686	75			25	0.996473
689		33		66	0.997452
696	75			25	0.996473
698	25	75			0.996473
705	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain