SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4573

Length: 1164 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4573

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglycosylase n=2 Tax=Asteroideae RepID=D9I0J0_9ASTR	-	-	61%
FL-Next	sp=Probable xyloglucan endotransglucosylase/hydrolase protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	xyloglucan endotransglucosylase hydrolase	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	77%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	77%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	77%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	77%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	77%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LER3

Fln msg:

Fln protein: MVFLVIIFGICLTSVSARPVSFSGGFKVTWGDDHVRTRQDNSIELMLDRNSGAGFASKHEYMFGVVSMKIKLVPGDSAGTVTAFYMSSDRNDVRDEVDFEFLGNISGQPYTVQTNLFTRGNGGREQRVDLWFDPSSDFHKYSIFWNHYQIIFSVDDIPIRVYKNNEAKGVQYPSNQRMAIFSTLWDGDSWATRGGLDKIDWSKAPFVTSYTDFDIDACELPANPSCASNPNNWWEGPSYRNLSPHQARQYKWVRKNYMIYDYCTDRSRYPVPPTECTVGI*

Protein Length: 282

Fln nts: ATGAAGAGACTTCTGGTGTAGAATTGTTGCAGAAAGA_-_ATGGTTTTCCTTGTTATTATATTTGGTATTTGCTTAACATCAGTCTCAGCACGCCCGGTATCGTTTTCAGGCGGTTTTAAAGTCACTTGGGGAGATGACCATGTGAGGACTAGGCAGGATAATTCAATTGAGTTAATGTTGGATCGTAATTCAGGCGCAGGATTTGCATCAAAGCATGAGTACATGTTCGGGGTTGTGAGCATGAAAATCAAACTCGTCCCAGGTGATTCTGCAGGCACAGTCACTGCTTTTTATATGAGCTCTGACAGGAATGATGTGCGAGATGAAGTGGACTTCGAGTTTTTGGGGAACATATCAGGCCAGCCTTATACAGTACAGACAAATCTCTTCACTCGAGGGAATGGTGGCCGAGAGCAGAGAGTGGATCTCTGGTTCGACCCTTCATCAGACTTTCACAAATATTCTATTTTCTGGAACCATTACCAGATTATATTTTCTGTGGATGACATCCCCATTAGGGTTTACAAGAACAATGAAGCCAAAGGCGTACAATACCCTAGTAATCAGAGGATGGCGATCTTCTCTACCCTCTGGGATGGCGATAGTTGGGCAACGAGAGGAGGACTGGACAAAATCGACTGGAGCAAGGCACCATTCGTGACTTCCTACACGGATTTTGACATCGATGCTTGCGAGTTACCAGCCAACCCGAGCTGCGCGTCCAATCCCAACAATTGGTGGGAAGGTCCGAGTTACAGGAATCTAAGCCCACATCAAGCAAGACAGTACAAATGGGTGAGGAAGAATTACATGATTTACGATTACTGTACAGACAGGTCCAGATATCCGGTGCCACCCACAGAGTGCACTGTTGGCATCTGA___TCATTCCCTTATTAACGTCAATAAACAGAAGCAAAACAAAACTTATGCAAGGTCATAATGGATTATCCTCACTCTAAGATGTTTTCAGCCCATGAGTGAGAAACCAGAGGTCCCGAACATATGCGGTCAACTCTAACAACAACGTAGTAAGTGATTACTATTCTTATATATATCAGTGTTAACATGGATGTATCAAGTATTCATAGATATAGAAGGTAAAAGATAAGTTTGAAATTGTCATTTTAGCTAAGAGATTATTAGAAGGTTGGGTTAGTTTATTATCG

Fln Alignment:

sp_v1.1_unigene4573___IVAERMVFLVI---IFGICLTSVSARPVSFSGGFKVTWGDDHVRTRQDN--SIELMLDRNSGAGFASKHEYMFGVVSMKIKLVPGDSAGTVTAFYMSSDRNDVRDEVDFEFLGNISGQPYTVQTNLFTRGNGGREQRVDLWFDPSSDFHKYSIFWNHYQIIFSVDDIPIRVYKNNEAKGVQYPSNQRMAIFSTLWDGDSWATRGGLDKIDWSKAPFVTSYTDFDIDACELXXXXXXXXXXXXWWEGPSYRNLSPHQARQYKWVRKNYMIYDYCTDRSRYPVPPTECTVGI
Q8LER3______________LFSSRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHI-TQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
979	10		85		0.999793
1044	11	88			0.999952
1050	10			90	0.90298
1052	11			88	0.923564
1054	11			88	0.923564
1111		16		83	0.994512
1119		40		60	1.0
1122		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain