SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4566

Length: 2547 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4566
TTGACACTGCAGCTTGTTATTGTAGAGTAGATACAAGCCTAAAAACTGTAGCTGGGGCGAAGAAATTTGTACCGGGATCAAAGATTTGTGTACAGCCTGACATTAAACCATCTATTCGAGGACCGAAAAGCAAGAGTGCACGAGGAGAAAAGAACAAGGTTCCTTCTGCATTATTGCCTGGCCTTCCTGACGATTTAGCCATAGCTTGTTTAATTCGCGTCCCCCGAGTGGAGCATAGAAAACTTCGTCTTGTCTGCAAGAGATGGTATCGGCTGCTGGCAGGAAACTTTTTCTATTCCCTAAGGAAGAACTTGGGCATGGCTGAGGAATGGATATATGTGATTAAGAGAGATCGAGATGGTCGCATATCGTGGCATGCTTTTGATCCCATCTATCAACTTTGGCAACCTCTTCCTCCAGTTCCAGGGGAGTATTGTGAAGCTCTAGGGTTTGGCTGTGCTGTCCTTAGTGGATGCCACCTTTACTTATTTGGAGGGAAGGATCCCATGAAGGGATCAATGAGGCGTGTGGTCTATTACAGTGCAAGGACCAATAAATGGCACCGGGCTCCAGACATGTTGCGGAGAAGACACTTCTTTGGTTCATGTGTAATAAATAATTGCCTATATGTTGCAGGTGGAGAGTGTGAGGGAATTCAACGGACCTTGAGATCAGCAGAAGTTTATGACCCAAACAAGAATAGGTGGTCGTTTATCTCAGACATGAGTACAGCCATGGTTCCATTCATTGGAGTTGTATATGAGGGGAGATGGTTTTTGAAAGGCCTTGGGTCTCATCGTCAAGTCATGAGTGAAATGTATGTTCCTACAACTAATAATTGGTCCCCAGTTTATGATGGCATGGTTGCAGGCTGGCGCAATCCTAGTGTGTCTCTTAATGGCCAACTATATGCATTAGACTGCAGAGATGGATGTAAGCTGAGAGTCTATGATGGCACTTCTGATTCTTGGAACAAGTATGTGGACAGCAAGTTACATTTGGGTAACTCTCGTGCATTAGAGGCAGCAGCGCTGCTGCCCTTAAATGGGAAGCTTTGTATAATTCGGAATAATATGAGTATCACAATGGTTGATGTGGAAAAAGCAGATGACACAACAAGGAAAGGTCTGCTTTGGGAAACCATTGCAGGAAAAGGCCATTTCAAAACGTTTGTGACAAATCTCTGGTCAAATATTGCTGGAAGAAACCGTCTCAAGAGTCACATTGTTCACTGTCAAGTACTTCAAGCATAGTGGTAGGTACACCATTGCTGTTCTAACATCTTTAGGAGTCTCTAAACATCCTCTGACAAACACAATCAGGAGTAGATAGTAGCCACAAGTTGCTTACATAATTTTGCAGCCATATGGTTGAGAATGGTTCAAGTTCTGTGTGCAAGTTATGGGTGTTGTCTGCTGTGATTGTTGGTAGATTTGTTTACAAGATTACTACCGGAATCCTAAGTTGCAGGAAAGGTAATCAAGCGTTGCCATTTTCAGATATTCCTGGTACAAGAGTGCAAACCTTTTTGTGCAAAGTCTATTTTGTTTTATGAAGAGGTTTACCTGTGTAAAAGCCTACAAGTAAAGCACAACCTTCTAAGCATTGCACTTATGCATTTGGATTGATCCCAACAATGTTATAGTTTGGAGATCAACTTTTGCATCGGTGGATTTTTAGTTCAAAACATTTTTGCAGAAGGTGGGGGCAAAAAAGGTGGGAAACAGATGGTTCAGCAAGATGAGGATTTGCGCTTATCAATTTAAGAATATTTGCGTTTGTTATTTGTGGTTGTAATGAAGCTTCATGCATTGATCAGCGTGTTTTCTATTGTTCTATGTGCCTTTACATGTCTAGTGAAAAGCCTGGTACTTTTCAATTGAAAAAAATAACCATGGCAGAAGAAAGATCAGTGATTTAACAAGCGTTTAGAATTCTCTGAATTGGTTAAAGATCACCTCATATTTGTACAGACCAGGAGACAAAGAAGTGTCTCAAAGATAGAGAACGGTGGACAAATAATCAGATCAGTTGAATCTGTACCATTGCAGATCAACGGCAATGAGCTATTTTTATTCAAATATTTATAGCAATTGTACACATGTAAATTTATTAGAGGTTATTTAAAGAGACCACTTTGCATATAAAGAGCCTGAAGATCTAGAGAGACTTTCATTAGTCTATGCGTGTACATGGTTATCTTGATTTCGAGTTAGTATTTGTGTGCTTGGAGAACTTCATATTTCATGGACTCCTCAAGTATTCAGGAAGCGATATTCCATTTTCTGATGGCATTGTTTGGATGTTTCTTGATAATACATTTTGTTATATATTTGTTATTTGTGCCGATGCTGAATGGTGCTTTCTTTTTGACTAAATATAATGACACCTAACTGTGTTTTTGCCATTGCTCAGTAAGGGCTATAAACAACGAACATAGTTCAAAAAGGAGGAAGATGCACTCATGGAATGGGTGGACTATGGCTGAGTAGTCTTGAATGGTATGAATAGTAAATGGAAACTTGGACCAAGGAGAGAACATCTGTT

Ace file of the UniGene sp_v1.1_unigene4566

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AFR, putative n=1 Tax=Ricinus communis RepID=B9SEQ0_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	87%
Blast2go	Kelch repeat type 1	IPR006652	-	87%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	87%
Blast2go	F-box domain, Skp2-like	IPR022364	-	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P298

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 417 - 369

Fln protein: DTAACYCRVDTSLKTVAGAKKFVPGSKICVQPDIKPSIRGPKSKSARGEKNKVPSALLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLAGNFFYSLRKNLGMAEEWIYVIKRDRDGRISWHAFDPIYQLWQPLPPVPGEYCEALGFGCAVLSGCHLYLFGGKDPMKGSMRRVVYYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYEGRWFLKGLGSHRQVMSEMYVPTTNNWSPVYDGMVAGWRNPSVSLNGQLYALDCRDGCKLRVYDGTSDSWNKYVDSKLHLGNSRALEAAALLPLNGKLCIIRNNMSITMVDVEKADDTTRKGLLWETIAGKGHFKTFVTNLWSNIAGRNRLKSHIVHCQVLQA*

Protein Length: 418

Fln nts: TTGACACTGCAGCTTGTTATTGTAGAGTAGATACAAGCCTAAAAACTGTAGCTGGGGCGAAGAAATTTGTACCGGGATCAAAGATTTGTGTACAGCCTGACATTAAACCATCTATTCGAGGACCGAAAAGCAAGAGTGCACGAGGAGAAAAGAACAAGGTTCCTTCTGCATTATTGCCTGGCCTTCCTGACGATTTAGCCATAGCTTGTTTAATTCGCGTCCCCCGAGTGGAGCATAGAAAACTTCGTCTTGTCTGCAAGAGATGGTATCGGCTGCTGGCAGGAAACTTTTTCTATTCCCTAAGGAAGAACTTGGGCATGGCTGAGGAATGGATATATGTGATTAAGAGAGATCGAGATGGTCGCATATCGTGGCATGCTTTTGATCCCATCTATCAACTTTGGCAACCTCTTCCTCCAGTTCCAGGGGAGTATTGTGAAGCTCTAGGGTTTGGCTGTGCTGTCCTTAGTGGATGCCACCTTTACTTATTTGGAGGGAAGGATCCCATGAAGGGATCAATGAGGCGTGTGGTCTATTACAGTGCAAGGACCAATAAATGGCACCGGGCTCCAGACATGTTGCGGAGAAGACACTTCTTTGGTTCATGTGTAATAAATAATTGCCTATATGTTGCAGGTGGAGAGTGTGAGGGAATTCAACGGACCTTGAGATCAGCAGAAGTTTATGACCCAAACAAGAATAGGTGGTCGTTTATCTCAGACATGAGTACAGCCATGGTTCCATTCATTGGAGTTGTATATGAGGGGAGATGGTTTTTGAAAGGCCTTGGGTCTCATCGTCAAGTCATGAGTGAAATGTATGTTCCTACAACTAATAATTGGTCCCCAGTTTATGATGGCATGGTTGCAGGCTGGCGCAATCCTAGTGTGTCTCTTAATGGCCAACTATATGCATTAGACTGCAGAGATGGATGTAAGCTGAGAGTCTATGATGGCACTTCTGATTCTTGGAACAAGTATGTGGACAGCAAGTTACATTTGGGTAACTCTCGTGCATTAGAGGCAGCAGCGCTGCTGCCCTTAAATGGGAAGCTTTGTATAATTCGGAATAATATGAGTATCACAATGGTTGATGTGGAAAAAGCAGATGACACAACAAGGAAAGGTCTGCTTTGGGAAACCATTGCAGGAAAAGGCCATTTCAAAACGTTTGTGACAAATCTCTGGTCAAATATTGCTGGAAGAAACCGTCTCAAGAGTCACATTGTTCACTGTCAAGTACTTCAAGCATAG___TGGTAGGTACACCATTGCTGTTCTAACATCTTTAGGAGTCTCTAAACATCCTCTGACAAACACAATCAGGAGTAGATAGTAGCCACAAGTTGCTTACATAATTTTGCAGCCATATGGTTGAGAATGGTTCAAGTTCTGTGTGCAAGTTATGGGTGTTGTCTGCTGTGATTGTTGGTAGATTTGTTTACAAGATTACTACCGGAATCCTAAGTTGCAGGAAAGGTAATCAAGCGTTGCCATTTTCAGATATTCCTGGTACAAGAGTGCAAACCTTTTTGTGCAAAGTCTATTTTGTTTTATGAAGAGGTTTACCTGTGTAAAAGCCTACAAGTAAAGCACAACCTTCTAAGCATTGCACTTATGCATTTGGATTGATCCCAACAATGTTATAGTTTGGAGATCAACTTTTGCATCGGTGGATTTTTAGTTCAAAACATTTTTGCAGAAGGTGGGGGCAAAAAAGGTGGGAAACAGATGGTTCAGCAAGATGAGGATTTGCGCTTATCAATTTAAGAATATTTGCGTTTGTTATTTGTGGTTGTAATGAAGCTTCATGCATTGATCAGCGTGTTTTCTATTGTTCTATGTGCCTTTACATGTCTAGTGAAAAGCCTGGTACTTTTCAATTGAAAAAAATAACCATGGCAGAAGAAAGATCAGTGATTTAACAAGCGTTTAGAATTCTCTGAATTGGTTAAAGATCACCTCATATTTGTACAGACCAGGAGACAAAGAAGTGTCTCAAAGATAGAGAACGGTGGACAAATAATCAGATCAGTTGAATCTGTACCATTGCAGATCAACGGCAATGAGCTATTTTTATTCAAATATTTATAGCAATTGTACACATGTAAATTTATTAGAGGTTATTTAAAGAGACCACTTTGCATATAAAGAGCCTGAAGATCTAGAGAGACTTTCATTAGTCTATGCGTGTACATGGTTATCTTGATTTCGAGTTAGTATTTGTGTGCTTGGAGAACTTCATATTTCATGGACTCCTCAAGTATTCAGGAAGCGATATTCCATTTTCTGATGGCATTGTTTGGATGTTTCTTGATAATACATTTTGTTATATATTTGTTATTTGTGCCGATGCTGAATGGTGCTTTCTTTTTGACTAAATATAATGACACCTAACTGTGTTTTTGCCATTGCTCAGTAAGGGCTATAAACAACGAACATAGTTCAAAAAGGAGGAAGATGCACTCATGGAATGGGTGGACTATGGCTGAGTAGTCTTGAATGGTATGAATAGTAAATGGAAACTTGGACCAAGGAGAGAACATCTGTT

Fln Alignment:

sp_v1.1_unigene4566___CVQPDIKPSIRGPKSKSAR-GEKNKVPSALLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLAGNFFYSLRKNLGMAEEWIYVIKRDRDGRISWHAFDPIYQLWQPLPPVPGEYCEALGFGCAVLSGCHLYLFGGKDPMKGSMRRVVYYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFISDMSTAMVPFIG--VVYEGRWFLKGLGSH--RQVMSEMYVPTTNNWSPVYDGMVAGWRNPSVSLNGQLYALDCRDGCKLRVYDGTSDSWNKYVDSKLHLGNSRALEAAALLPLNGKLCIIRNNMSITMVDVEKADDTTRKGLLWET
A9P298______________CKQPDLDNALHFEKTRGQYDSDFGDTDSELIPGLPHDIGILCLARVPRRDHQLLKCVSKKWRDFISSELYF-YRQRLGIADGWIYAVCRDSSECVHCYVLDPARRKWKKLPGLPYACSKRFGMTCEVL-GRKLYLLGGCGWTEDATNEVYCYDPLLNKWENVANMETARFHFVSGASDGCLYAIGGMGSN-SEALTSWETYDSEANKWTSHEDLN--ILPDLGESLAFDSRIYIRHISTNVFPATYAAVYDTSNDVWSPVDNEMTMNWCGPAIVVGDDVYMLDQTAGIKLMMLDKENQSWVSVGRISTYLIKT----PCRITAIGNTLFVIGRGLQTLMLDLDKVGRV--KGTLMTT

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
769			66	33	0.997452
772	33		66		0.997452
776			66	33	0.997452
777	33			66	0.997452
779			33	66	0.997452
782		25	75		0.996473
783	75	25			0.996473
784	75			25	0.996473
1277		11		88	0.923564
1388	88	11			0.923564
1397	11			88	0.923564
1398		11	88		0.923564
1400	88			11	0.923564
1401	88			11	0.923564
1403			11	88	0.923564
1405	88		11		0.923564
1407		11	88		0.923564
1408	11		88		0.923564
1409		11	88		0.923564
1411		11	88		0.923564
1412	11			88	0.923564
1478		12	87		0.992554
1481	87	12			0.992554
1482	87		12		0.992554
1484		87	12		0.992554
1486	87	12			0.992554
1489			87	12	0.992554
1491			12	87	0.992554
1494		87		12	0.992554
1495	87		12		0.992554
1497		12		87	0.992554
1498	12			87	0.992554
1567	60		40		1.0
1580		60		40	1.0
1624		16		83	0.994512
1626			83	16	0.994512
1627	83	16			0.994512
1628			16	83	0.994512
1632		16		83	0.994512
1634		83		16	0.994512
1635		83		16	0.994512
1636	83		16		0.994512
1637	83		16		0.994512
1639	83			16	0.994512
1640	83		16		0.994512
1642		16	83		0.994512
1643	16			83	0.994512
1645	83	16			0.994512
1646	16			83	0.994512
1688	40		60		1.0
1694		16		83	0.994512
1695			16	83	0.994512
1697		16		83	0.994512
1699		83		16	0.994512
1703	83	16			0.994512
1704		16	83		0.994512
1705			83	16	0.994512
1709		20	80		0.995493
1710			80	20	0.995493
1712		80		20	0.995493
1713	75	25			0.996473
1715	75	25			0.996473
1716	75			25	0.996473
1717	25	25	50		0.995533
1719		20	80		0.995493
1722		20	80		0.995493
1724			80	20	0.995493
1725	80		20		0.995493
1727	80	20			0.995493
1729	75			25	0.996473
1735		25		75	0.996473
1737		75	25		0.996473
1738	75			25	0.996473
1742	75	25			0.996473
1746		25	75		0.996473
1828			20	80	0.995493
1829	20			80	0.995493
1830		20		80	0.995493
1835			20	80	0.995493
1837		20		80	0.995493
1839		80	20		0.995493
1843		20	80		0.995493
1893	25			75	0.996473
1894	75			25	0.996473
2145			66	33	0.997452
2158		66	33		0.997452
2160		33	66		0.997452
2161	66		33		0.997452
2162	66			33	0.997452
2165		33		66	0.997452
2168	66			33	0.997452
2170	66		33		0.997452
2171		33	66		0.997452
2172	66			33	0.997452
2174	66			33	0.997452
2176	33			66	0.997452
2177		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain