SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4533

Length: 1707 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4533

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein HLJ1, putative n=1 Tax=Ricinus communis RepID=B9SEQ7_RICCO	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg:

Fln protein: MDSNKDDALKCLNIGKAAIAAGDTNRARKFLSKARRLDPSLSLDELLAACAEDANNGKEASTETPISNQTRDADAAKMSDVSSRNSSGARNYSDEQVEIVRQIKRNKDYYVILGLEKNCSVEDIRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEDMRRKYDVTGPDEDFELAQQQHVRRRRAHQGFYDEGFDPDEIFRSFFFGSQQSDFFTRAHVMRTRAAAAGANSGGRTHEAVGGFNLVTLLQILPILILFLVTYLPYSEPLYSLQKAHPYQFRKVTKDYGVPYYVKSVDFDKELQPGSPQRADLEIQIVRDYKVHLGRYCHMELQRRQWARHLETPHCDKLRQFETVR*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCGTCGTGACCTTGGCTGTCACTCAATCTTTTCTTCTTCGTTTCTTGAAGAGGAGGAGGTGAGGAAACGCCCTCCGGATGCAGATCGGGTCGAAGGCCGACCAAATTCGAACGCACGACCTCTAGATCGTCTCAGCACGTCCATGGAAAGTAGCTTATAGGCATCCGGCCATCTGAGTATCC_-_ATGGATAGCAACAAAGACGACGCCTTGAAATGCCTGAACATCGGCAAAGCGGCCATCGCAGCCGGAGACACAAACCGTGCACGCAAATTCCTGTCGAAAGCCCGTCGCCTGGATCCTAGTCTCTCCCTAGACGAGCTCCTGGCGGCATGCGCTGAAGATGCTAATAACGGTAAGGAAGCCTCCACCGAAACTCCGATTTCTAACCAAACCCGAGATGCAGATGCGGCCAAAATGTCTGACGTTTCTAGCAGAAATTCGAGCGGAGCCAGAAATTACTCAGACGAGCAGGTGGAGATTGTGCGGCAGATTAAGAGGAATAAAGATTACTATGTCATTTTGGGGTTAGAGAAGAATTGCTCCGTAGAGGATATTAGGAAGGCCTACAGGAAGTTGTCTCTCAGGGTTCACCCGGATAAAAACAAGGCCCCCGGTTCCGAGGAGGCCTTCAAGGCCGTTTCCAAGGCCTTCCAGTGCCTGAGCAACGAGGATATGAGGCGCAAATATGACGTTACAGGCCCCGATGAGGATTTCGAGTTAGCCCAACAACAACATGTGAGGAGACGCAGGGCGCATCAGGGTTTCTATGACGAAGGATTCGATCCGGATGAGATTTTTAGGTCTTTTTTCTTTGGATCTCAACAGTCTGATTTTTTCACCAGGGCCCATGTCATGAGAACCAGGGCAGCGGCGGCTGGGGCGAACAGCGGTGGCCGCACTCACGAGGCCGTAGGCGGCTTCAATTTGGTCACTCTCTTGCAGATTTTACCCATCTTGATTCTGTTTTTGGTTACTTATTTGCCTTATTCAGAACCTCTCTACTCGCTGCAGAAGGCTCATCCTTATCAATTCCGCAAAGTTACTAAGGACTACGGAGTGCCGTATTATGTCAAATCAGTTGATTTTGATAAGGAGCTTCAGCCGGGTAGCCCGCAGCGGGCTGATCTAGAGATTCAGATTGTTAGGGATTACAAGGTTCATCTTGGGAGGTACTGCCACATGGAGTTACAGAGGCGCCAGTGGGCGAGGCACTTGGAGACTCCCCACTGCGATAAGCTCAGGCAGTTCGAAACTGTTAGATGA___GCTGGTACGAACAATAGTATCAAGTTTATAGGTATCAATTTTACAGGTCAAGGTTCCGTCAACCTTTCAGTTGGATTTTTGAAGCATTGTTGTTCTGTGTTAGTATGACGCTCTTCTAAAGTAGCCACCTTCTTTGCGTATTTACAGTGGTTGTTTACTTCATCATTTATTCGATTTATTTGGTGTCTGCAAATATATGCTATCAGAAGCCTGAAGGCCGAGATGGCTTGTATAAAGTGCAATAATCACATAAATATTTATTTAGGAAATTTAGTCTTAAAATTCACTATGATGCAGTTCTTTTCTTGTTGTTGAGGAGAGATCAGTAGGGAATATGGACGGAAACTGAGATGTATGGCAACCAATATACAATCAACTGTTCTTGGATGTCTATTTGTTCAAAGTTGTTTCAATT

Fln Alignment:

sp_v1.1_unigene4533___MDSNKDDALKCLNIGKAAIAAGDTNRARKFLSKARRLDPXXXXXXXXXXXXXXXNNGKEASTETPISNQTRDADAAKMSDVSSRNSSGARNYSDEQVEIVRQIKRNKDYYVILGLEKNCSVEDIRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEDMRRKYDVTGPDEDFELXXXXXXXXXXXXXGFYDEGFDPDEI--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEAVGGFNXXXXXXXXXXXXXXXVTYLPYSEPLYSLQKAHPYQFRKVTKDYGVPYYVKSVDFDKELQPGSPQRADLEIQIVRDYKVHLGRYCHMELQRRQWARHLETPHCDKLRQFETVR
A9NV01______________MDSNKDDALKCLNIGKAAIAAGDTNRARKFLSKARRLDPNLSIDELLAACAEDANNGKESSTEIPISNQTRDADAAKMSDISSGNSRGARNYTDEQVEIVRLIKRNKDYYVILGLEKNCSVEDVRKAYRKLSLRVHPDKNKAPGSEEAFKAVSKAFQCLSNEEMRRKYDLTGPDEDFEYTQQQHVRRRRAHQGFYDEGFDPDEIFRSFFFGSPQTDFFSRAHVMRTRAAAAAGANSGGGRTHEAVGGFNLVTLLQILPILILFLVTYLPYSEPHYSLQKAHPYQFRKVTKDFGVPYFVRSVDFDKELQPGSPQRADLELQVIRDYKGYLGRYCHLELQRRQWARHLETPHCDKLRQFETVR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1309	92	8			0.999718
1349		90	9		0.999842
1351	9		90		0.999872
1354	90	9			0.999872
1362	90			10	0.999898
1372			10	89	0.999919
1374		10	89		0.999919
1694	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain