SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4516

Length: 1297 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4516

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	electron carrier/ oxidoreductase	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Taurine catabolism dioxygenase TauD/TfdA	IPR003819	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQL6

Fln msg: Overlapping hits, possible frame ERROR between 628 and 624, your sequence is longer than subject: 343 - 235

Fln protein: MGAARGSSATLHAFLEGRTAEQKIVGGKSDEKRLFPKVLLPAHQSIDSHHHTGVIAAITQTIRNNREWIERELMENSALLFRGFPLRSAADFSLFVEAFGWEEQPYMGFAPRAKVDDTVYTANEAPLHEQIEFHHEMALMKTWPSKLFFFCETAPPEGGQTSIVLSQSIPQRMEARMPEFVRRLKKLxxxMFKVTTPAQNTKASFIAKNWESALGTNDPSEAKKRAAEVMGCSSFECNEDGSAEFVFGPLEAIRTFEGYRGRKVWFNTIGGYGERSKNQWLGFGDGSDIPGEAVEALKGILDEECVDFTWQEGDVLLLDNLAVQHGRRPSQPPRRVLVAMCK*

Protein Length: 344

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCCTTTTCGTTGATGTAATCTCTCTCGGCATTC_-_ATGGGCGCTGCGCGAGGATCATCTGCAACCCTGCACGCTTTCTTGGAAGGCCGAACAGCAGAGCAGAAGATTGTTGGAGGAAAATCAGATGAAAAAAGATTATTTCCCAAAGTTCTGCTCCCTGCTCACCAAAGCATCGATTCTCATCATCACACAGGAGTGATTGCAGCTATAACCCAGACAATACGTAACAACAGAGAATGGATAGAACGGGAGCTCATGGAAAACAGCGCTCTGCTCTTCAGAGGATTCCCTCTCAGATCAGCCGCTGATTTCAGTTTATTTGTGGAAGCGTTTGGATGGGAAGAGCAACCGTATATGGGATTTGCTCCCAGAGCAAAGGTGGATGACACAGTCTACACAGCCAACGAAGCTCCTTTGCACGAGCAGATAGAGTTCCACCATGAAATGGCCCTGATGAAAACGTGGCCATCGAAGTTATTTTTCTTTTGTGAAACTGCACCTCCAGAGGGTGGACAGACTTCCATAGTTCTCAGCCAAAGCATTCCGCAGCGAATGGAAGCCAGGATGCCTGAATTTGTAAGGAGATTGAAGAAGCTAxxxxxxxxxATGTTTAAAGTAACTACTCCAGCCCAAAATACAAAGGCTTCCTTCATAGCCAAAAATTGGGAGTCTGCTTTGGGAACGAACGACCCAAGTGAAGCAAAGAAGAGAGCTGCAGAAGTGATGGGTTGTTCAAGTTTCGAATGCAATGAAGATGGATCAGCAGAGTTCGTGTTTGGCCCCCTCGAAGCTATTAGAACATTTGAGGGATACAGAGGGAGGAAAGTCTGGTTTAATACCATAGGCGGCTATGGCGAAAGAAGCAAAAACCAGTGGCTAGGTTTCGGCGATGGAAGTGATATCCCTGGCGAAGCAGTGGAGGCCTTGAAGGGCATACTGGATGAGGAGTGCGTAGATTTCACGTGGCAGGAAGGAGATGTGTTGTTGTTGGACAACTTGGCTGTTCAGCATGGAAGAAGGCCCTCACAGCCCCCACGTCGTGTCCTCGTCGCCATGTGCAAATAG___AATATATTATTCATCTTCCAATCAATGTATTCCTTGGCAATCAATAACTACCTTCCATTTTTCATTGATTCATAGATATTTTGGACGGTCCATTGTGATAATAAGGTTAGGATGTGTCTGACCATCCATGGAAAACTGTCAGTTCTCATGTGTAATGTCATGTTTTTGATGAATATTTATGGAGAAGAAACAGTGTGTACTTTGAATCC

Fln Alignment:

sp_v1.1_unigene4516___MGFAPRAKVDDTVYTANEAPLHEQIEFHHEMALMKTWPSKLFFFCETAPPEGGQTSIVLSQSIPQRMEARMPEFVRRLKKLxxMFKVTTPAQNTKASFIAKNWESALGTNDPSEAKKRAAEVMGCSSFECNEDGSAEFVFGPLEAIRTFEGYRGRKVWFNTIGGYGERSKNQWLGFGDGSDIPGEAVEALKGILDEECVDFTWQEGDVLLLDNLAVQHGRRPSQPPRRVLVAMCK
C0PQL6______________MGFPYRTKVEDRVYTTNEAPLHEQIDFHHEMSLMKVWPSKLFFFCETAPPEGGQTAIALSRRIVQRMEYRMPEFVTRLKDVxxVFKITTPTEISRTSFIAKNWQSALETKDPREAKKRAVEMMGCSSFECYEDGSAEFVFGPMEAIRAFEGYGGRQVWFNNIVGYGGKNRNQSLSLGDGCGIPGEALDAFKAILNEECVDLKWEEGDVLLLDNMAVQHARRPSKPPRRILIAMCK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
155	87		12		0.992554
208		12		87	0.992554
289		71		28	1.0
342		50		50	1.0
349	33		66		0.997452
385	33	66			1.0
502		33		66	0.997452
649		75		25	0.996473
667	25		75		0.996473
776		50		50	1.0
846	80		20		0.995493
1077			83	16	0.994512
1102			50	50	1.0
1126		20		80	0.995493
1129	20	80			0.995493
1133		80	20		0.995493
1178		75		25	0.996473
1230	25		75		0.996473
1243		25		75	0.996473
1250		25		75	0.996473
1258			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain