SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4500

Length: 2347 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4500
CCAGCAGATTGCAGAACGAAGGAAACTTGTTTCATCTTTTAAACATAAATTAGGCGGTTCATCCAAGCAAGCCCAATATTTTAATGAGGATAATAGTTCTGAGGATGACGTGGTACTCGGAAAAAATGAAGAGACCGAGGTGCGAGAAAACTTTTCTGAAGAGTCTTTGGCAAATTTGTCAAATACAACATCTGCAGAATTTTTATGTGAAGACCAGACATTGCCAGGATCTGTACCTGACATGAAGAGGTTTAATGCACTGGAAATTTCAGGGCGACCTTCTGTGTCGTCCTCCACAAGTTCACCAAAATCACTTTTGTCAACAACTTTGGGTATGCCAGGCGTGCTTGGAACAAAGAGTGAAGATCTCTATGATTCTGTGAAAGAGCCAGGACCAGAACCAGAAATTGAAACTGATGCTAAAGCTGAAATTACTACAGCATCCAGTGAGGGAGAGGCAAAGCCCCCTCCGTTGGCTGGCACAAATGTTATGAATATTATAGTGGTAGCTGCAGAGTGTGCTCCTTGGTCTAAAACTGGTGGTTTGGGTGATGTGGTTGGTGCTCTACCCAAGGCTCTGGCTCGGCGTGGACATAGAGTAATGGTCGTGGCTCCTCGATATAGTGATTATCGTGAAGGACAGGACACAGGAGTTCACAAGCAATATAGAATACATGGACAGGACTTTGAAGTTGGCTATTACCAAGCTTACATTGATAATGTGGATTTTGTATTTATCAATAGTCCAATATTTAAGGGATTTAACAACAACATATATCAGGGAAATCGGGAGGATATTTTGAAGCGCATGGTACTCTTTTGCAAAGCTGCAGTTGAGGTTCCTTGGCAGGTACCTTGTGGTGGTGTATGTTATGGGGATGGCAACCTGGTCTTTGTTGCGAATGACTGGCACACTGCGTTGTTGCCTGTCTATCTTCAGGCATATTATCGGGATCATGGCCTCATGAAGTACACTCGATCTGTCCTTGTGATTCATAACATCGCACACCAGGGACGTGGGCCACTGGATGATTATAAATTTCTAGACTTGCCAGAGCACTATATGGACTGTTTTAAGCTTTATGATCCTGTTGGAGGAGAACACCTGAATATTTTCATGGCCGGTCTAAAAACTGCTCATCAAATTGTTGCAGTAAGCCATGGGTATGCCTGGGAATGCCAAACATCAGAAGGTGGGTGGGGCTTACATGAAGTAGTAAAGGAGAATACCTGGAAACTTAGAGGAATCGTGAATGGCATTGACAATAATGATTGGAGCCCAGAATTAGATGTCCATCTCAAGAATGATGGTTATGCCAATTATTCTATAGAAACACTTGAAACTGGTAAGGCTACATGTAAAACTGCATTGCAGAAAGAGCTTGGTTTGCCTGTGCGGTCTGATGTGCCAGTCATTGGCTTCATTGGACGACTAGACTATCAGAAAGGGGTAGATATTATTGCAGAGTCTATGCCTTGGATTGTTCAACAAGATATACAGTTAGTGATGCTAGGTACAGGAAGAAGTGATTTAGAAAACATGCTGCGCTCATTTGAGGGTCACCACCGGGATAAAGTTCGTGGTTGGGTGGGATTTTCTGTCAGAACAGCCCATCGCTTCACAGCAGGATGTGATATTTTATTAATGCCATCAAGGTTTGAGCCTTGTGGTCTAAACCAGCTTTATGCTATGCGATACGGAACTGTCCCAGTTGTCCATGCTGTAGGGGGCCTCAAAGATACTGTAAAACCTTTTGATCCATTTTCAGAGACTGGCCTTGGCTGGACATTTGAATGTGCAGAATCATCTAGGTTAATTCATGCTCTTGGCAATGCCTTGTGGACATATCGCGACTTCAAGCAAAGCTGGCGCGGTATACAAAAGCGTGGTATGAGCCAAGACCTCAGCTGGGACAATGCTGCAAAGCAGTATGAAGAAGTTTTTCTTGCTGCAAAATATCAATGGTAATAAAATCTTGTCACGATGAAGCTGTTCAGGATTGAACACAAATTTTGAATTCATCATGGCATGCAAATGATATATTATTATGAAAGTATGATACCTTAGAATCTATAAGTGGATCAGTACTGCACATAGTCTAGCAGAGAAAGAGTTTTTGTACATACTTAAATGGAACAGCAAAGAGATGAGACAATCTCTACTTGAGAGGGAAAGTGAACATGTTCCACAGAACACTGGGCTCCTTTGTAAGTAACCTTTATTGTATCCAGCTTTTGTTGCCATTTTCTTTAAAAATAGCTGTCNCTAAGATGGATTAATTTGTGTGTTCTAACTTCTAACAAAAGGAAAGCTACTGTGAATGAAATCTTTTTCAGTTCAGAGAAG

Ace file of the UniGene sp_v1.1_unigene4500

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to starch synthase n=1 Tax=Vitis vinifera RepID=UPI0001984C32	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	starch synthase	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Glycosyl transferase, family 1	IPR001296	-	79%
Blast2go	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	79%
Blast2go	Starch synthase, catalytic domain	IPR013534	-	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW8

Fln msg: your sequence is shorter than subject: 656 - 760

Fln protein: QQIAERRKLVSSFKHKLGGSSKQAQYFNEDNSSEDDVVLGKNEETEVRENFSEESLANLSNTTSAEFLCEDQTLPGSVPDMKRFNALEISGRPSVSSSTSSPKSLLSTTLGMPGVLGTKSEDLYDSVKEPGPEPEIETDAKAEITTASSEGEAKPPPLAGTNVMNIIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSDYREGQDTGVHKQYRIHGQDFEVGYYQAYIDNVDFVFINSPIFKGFNNNIYQGNREDILKRMVLFCKAAVEVPWQVPCGGVCYGDGNLVFVANDWHTALLPVYLQAYYRDHGLMKYTRSVLVIHNIAHQGRGPLDDYKFLDLPEHYMDCFKLYDPVGGEHLNIFMAGLKTAHQIVAVSHGYAWECQTSEGGWGLHEVVKENTWKLRGIVNGIDNNDWSPELDVHLKNDGYANYSIETLETGKATCKTALQKELGLPVRSDVPVIGFIGRLDYQKGVDIIAESMPWIVQQDIQLVMLGTGRSDLENMLRSFEGHHRDKVRGWVGFSVRTAHRFTAGCDILLMPSRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWRGIQKRGMSQDLSWDNAAKQYEEVFLAAKYQW*

Protein Length: 657

Fln nts: CCAGCAGATTGCAGAACGAAGGAAACTTGTTTCATCTTTTAAACATAAATTAGGCGGTTCATCCAAGCAAGCCCAATATTTTAATGAGGATAATAGTTCTGAGGATGACGTGGTACTCGGAAAAAATGAAGAGACCGAGGTGCGAGAAAACTTTTCTGAAGAGTCTTTGGCAAATTTGTCAAATACAACATCTGCAGAATTTTTATGTGAAGACCAGACATTGCCAGGATCTGTACCTGACATGAAGAGGTTTAATGCACTGGAAATTTCAGGGCGACCTTCTGTGTCGTCCTCCACAAGTTCACCAAAATCACTTTTGTCAACAACTTTGGGTATGCCAGGCGTGCTTGGAACAAAGAGTGAAGATCTCTATGATTCTGTGAAAGAGCCAGGACCAGAACCAGAAATTGAAACTGATGCTAAAGCTGAAATTACTACAGCATCCAGTGAGGGAGAGGCAAAGCCCCCTCCGTTGGCTGGCACAAATGTTATGAATATTATAGTGGTAGCTGCAGAGTGTGCTCCTTGGTCTAAAACTGGTGGTTTGGGTGATGTGGTTGGTGCTCTACCCAAGGCTCTGGCTCGGCGTGGACATAGAGTAATGGTCGTGGCTCCTCGATATAGTGATTATCGTGAAGGACAGGACACAGGAGTTCACAAGCAATATAGAATACATGGACAGGACTTTGAAGTTGGCTATTACCAAGCTTACATTGATAATGTGGATTTTGTATTTATCAATAGTCCAATATTTAAGGGATTTAACAACAACATATATCAGGGAAATCGGGAGGATATTTTGAAGCGCATGGTACTCTTTTGCAAAGCTGCAGTTGAGGTTCCTTGGCAGGTACCTTGTGGTGGTGTATGTTATGGGGATGGCAACCTGGTCTTTGTTGCGAATGACTGGCACACTGCGTTGTTGCCTGTCTATCTTCAGGCATATTATCGGGATCATGGCCTCATGAAGTACACTCGATCTGTCCTTGTGATTCATAACATCGCACACCAGGGACGTGGGCCACTGGATGATTATAAATTTCTAGACTTGCCAGAGCACTATATGGACTGTTTTAAGCTTTATGATCCTGTTGGAGGAGAACACCTGAATATTTTCATGGCCGGTCTAAAAACTGCTCATCAAATTGTTGCAGTAAGCCATGGGTATGCCTGGGAATGCCAAACATCAGAAGGTGGGTGGGGCTTACATGAAGTAGTAAAGGAGAATACCTGGAAACTTAGAGGAATCGTGAATGGCATTGACAATAATGATTGGAGCCCAGAATTAGATGTCCATCTCAAGAATGATGGTTATGCCAATTATTCTATAGAAACACTTGAAACTGGTAAGGCTACATGTAAAACTGCATTGCAGAAAGAGCTTGGTTTGCCTGTGCGGTCTGATGTGCCAGTCATTGGCTTCATTGGACGACTAGACTATCAGAAAGGGGTAGATATTATTGCAGAGTCTATGCCTTGGATTGTTCAACAAGATATACAGTTAGTGATGCTAGGTACAGGAAGAAGTGATTTAGAAAACATGCTGCGCTCATTTGAGGGTCACCACCGGGATAAAGTTCGTGGTTGGGTGGGATTTTCTGTCAGAACAGCCCATCGCTTCACAGCAGGATGTGATATTTTATTAATGCCATCAAGGTTTGAGCCTTGTGGTCTAAACCAGCTTTATGCTATGCGATACGGAACTGTCCCAGTTGTCCATGCTGTAGGGGGCCTCAAAGATACTGTAAAACCTTTTGATCCATTTTCAGAGACTGGCCTTGGCTGGACATTTGAATGTGCAGAATCATCTAGGTTAATTCATGCTCTTGGCAATGCCTTGTGGACATATCGCGACTTCAAGCAAAGCTGGCGCGGTATACAAAAGCGTGGTATGAGCCAAGACCTCAGCTGGGACAATGCTGCAAAGCAGTATGAAGAAGTTTTTCTTGCTGCAAAATATCAATGGTAA___TAAAATCTTGTCACGATGAAGCTGTTCAGGATTGAACACAAATTTTGAATTCATCATGGCATGCAAATGATATATTATTATGAAAGTATGATACCTTAGAATCTATAAGTGGATCAGTACTGCACATAGTCTAGCAGAGAAAGAGTTTTTGTACATACTTAAATGGAACAGCAAAGAGATGAGACAATCTCTACTTGAGAGGGAAAGTGAACATGTTCCACAGAACACTGGGCTCCTTTGTAAGTAACCTTTATTGTATCCAGCTTTTGTTGCCATTTTCTTTAAAAATAGCTGTCaCTAAGATGGATTAATTTGTGTGTTCTAACTTCTAACAAAAGGAAAGCTACTGTGAATGAAATCTTTTTCAGTTCAGAGAAG

Fln Alignment:

sp_v1.1_unigene4500___QQIAERRKLVSSFKHKLGGSSKQAQYFNEDNSSEDDVVLGKNEE-TEVRENFSEESLANLSNTTSAEFLCEDQTLPGSVPDMKRFNALEISGRPXXXXXXXXXXXXXXXXXGMPGVLGTKSEDLYDSVKEPGPEPEIETDAKAEITTASSEGEAKPPPLAGTNVMNIIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSDYREGQDTGVHKQYRIHGQDFEVGYYQAYIDNVDFVFINSPIFKGFNNNIYQGNREDILKRMVLFCKAAVEVPWQVPCGGVCYGDGNLVFVANDWHTALLPVYLQAYYRDHGLMKYTRSVLVIHNIAHQGRGPLDDYKFLDLPEHYMDCFKLYDPVGGEHLNIFMAGLKTAHQIVAVSHGYAWECQTSEGGWGLHEVVKENTWKLRGIVNGIDNNDWSPELDVHLKNDGYANYSIETLETGKATCKTALQKELGLPVRSDVPVIGFIGRLDYQKGVDIIAESMPWIVQQDIQLVMLGTGRSDLENMLRSFEGHHRDKVRGWVGFSVRTAHRFTAGCDILLMPSRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWRGIQKRGMSQDLSWDNAAKQYEEVFLAAKYQW
C0PPW8______________QQIAERRKLVSSFKDKLGGSSKQGQYFNEDNSSEDDQELEKNEEKTEVEENFSEESLESLSNTISGEFLSEDQTLPGSVPDMKRFNALEISGRPSVSSSTSSPKSLLSTTLGMPSVLGSKSEDIHHYEKQPGPEPEIETDVKAEITKASGEGEAKHPPLAGTNVMNIIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSDYREGQDTGIHKRYNIHGQEFDVNYYQAYIDNVDFVFIKSPIFQGFNNNIYQGNREDILKRMVLFCKAAVEVPWQVPCGGVCYGDGNLVFVANDWHTALLPVYLQAYYRDRGLMKYTRSVLVIHNIAHQGRGPLDDYKFLDLPQHYMDCFKLNDPVGGEHLNIFMAGLKTAHQIVAVSHGYAWECQTSEGGWGLHEVIKENAWKLRGIVNGIDNNDWNPELDVHLKNDGYVNYSIETIETGKTTCKTALQRELGLPVRSDVPVIGFIGRLDPQKGVDIIAESMPWMVQQDIQLVMLGTGRSDLENMLRSFEGQHQAKVRGWVGFSVRTAHRITAGCDILLMPSRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWLGIQKRGMSQDLSWDNAAKQYEEVLLAAKYQW

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
343		87		12	0.992554
446	50		50		1.0
721		16		83	0.994512
727		16		83	0.994512
728		16		83	0.994512
732			16	83	0.994512
733	83	16			0.994512
735			16	83	0.994512
736		33		66	1.0
1165		10	90		0.90298
1599	10	90			0.90298
1602			10	90	0.90298
1617	11		88		0.923564
2196	62			37	1.0
2268		33		66	0.997452
2287		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain