SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4495

Length: 2155 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene4495
AGGGAACAAGACAAAAGAGAGTAACAGAGGCGAAGGATTTGGATAGTACTTCTTTGATGGAAATTTCAACTTCAGATGCTGTACATATTCCTGTTCCCAGTATTCCAGATATAAACAATACTCATATTTCATCAATCCCTTCTCGAGGAATGGGAACCTCATCTCAACATCCTGAAATGCGTGGAAATCTTCCAGTTGCTTCAGCATTTGCTGCTACATCGTCTGTTGTTGCTTTGCCACAGGTCATAGCAACAAGTAAACGTAATGTTCTTAATGAAGCTCCTGAAAATGTTAAAAAAGATTCAGACACATCTGTTGCTCTTGCAAATCAAAATCATGTAGGACATAGTGATGCCTCGTTACACAATTTAGTGGGTAGGGAGAGTGCTCACAGCAGAGGTGAAAGAAGACCTTCTGACTCTGAAAGTCAGGTTGTTGGGTTAGTAGATTCCAGGGAAAATTCAGAAGATGAATCTGTGTCTTCATCTAATACGCATAATACACACCCTATAATGGATGATGTTGCAGAATGTGAAATCCGATTGGAATATCTGCAAATTGGTGAACGCATTGGACTAGGTTCTTATGGAGAAGTTTATCACGCAGACTGGAATGGCACGGAAGTTGCAGTTAAGAAGTTTCTTGATCAAGATTTTTCAGGAGATGCATTAGAGCAGTTCCGCAGTGAAGTGCGAATCATGCGAAGATTGCGTCACCCAAATATTGTTCTTTTTATGGGAGCTGTCACTCGGCCTCCAAATCTCTCTATTTTGACTGAGTTTCTTCCAAGAGGAAGCTTGTATAGGCTAATCCACCGCCCTAACATTCAAATAGATGAGAAGCGGCGTTTACGAATGGCTCTTGATGTGGCTCAAGGAATGAATTATTTGCACAGTAGCAATCCCGTAATAGTTCATCGAGATCTGAAGTCGCCAAATCTTCTCGTTGATAAAAATTGGGTGGTCAAGGTTTGTGATTTTGGCTTGTCACGCTTGAAGCACCATACATTCCTGTCTTCAAAGTCAACTGCAGGAACGCCGGAATGGATGGCACCAGAAGTTCTGCGGAATGAACCATCGAATGAAAAGTGTGATGTTTTTAGCTTTGGTGTGATCTTATGGGAGTTGGCTACTTTGCGTATGCCATGGAGTGGAATGAATCCCATGCAGGTAGTTGGTGCTGTTGGTTTTCAGAATCGTCGCCTTGATATTCCCAAGGAAATTGATCCAGATGCCGCAAAGATTATTTCTGAATGCTGGCAGAATGATCCAAATCTACGGCCTTCATTTGGAGAGCTTATGGTTGCTCTCAAGTCTTTGCAGAGGCTGCTTGTTTCACCTCTGTGAGAAACATGGCCTTGTCCTTTTCACCACAATAAGAAGCTGTAACTATCCAGATACGGATAAGATGATATGCTCTGAGAAACCTTAGAGCTATTGTTTGGTCCCTAAATCTAGTCGAGGGAAACAAATGATGCTGAAATTATGGTGCTGAATAGTGATATTCCTGGGGGTTGTCTTAAACATGAGCTATGGTTCAGTATATGCGTGCCTGAACCAAAAACAGCTAAACTCTATTAAAGGAAATGTAAAAGACCATGGCTATCCCATTCAGCAACTAAGAAAATTTTGGGAAATGGTTCCTTGAGAATTGTCAATTCCAAAACAAGTTCGAGTGTTGCGTTGGTCAAGTTTCTATATACAAAATTCATACAAAGTACACTGAAAGACCTTTCTGATTGTTTCATAAGTGGGTACGGCGGCTGTGCGAAGCACATAGGAAGTCAAACTTTTTCTGATTCTTCTGTAAATGTTAGTATAGGCCATGTCCATTCAAAACAGGATGGGCACGCGGAAGTTTCTTGTTTGTCATATAAATTGCTTTGACAGAGGGTCTTTTGACGCCTGGCAGTTTGCTTTGCTCTGTATACAGGCTTCTACTCTTCCGCTTTGTCAAATTTATAAATGTAGAAAATTGTCTGTGTACAGACAATCATGCCAGTTAATATGGATGATGTAATTTGATCTTGTACACAATTTACATTATTGCACCAAGAGAAGCGAAGTGCTTTCCAGTCTGGGTGGGAGAGATGCTGATGTAATGTATGTATGTAGATACTAATAAAATAAATGAAATGGAAAATGTTTAATGTACT

Ace file of the UniGene sp_v1.1_unigene4495 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	map3k delta-1 protein kinase, putative (EC:2.7.11.25)	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	map3k delta-1 protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: your sequence is longer than subject: 430 - 319

Fln protein: MEISTSDAVHIPVPSIPDINNTHISSIPSRGMGTSSQHPEMRGNLPVASAFAATSSVVALPQVIATSKRNVLNEAPENVKKDSDTSVALANQNHVGHSDASLHNLVGRESAHSRGERRPSDSESQVVGLVDSRENSEDESVSSSNTHNTHPIMDDVAECEIRLEYLQIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGDALEQFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSILTEFLPRGSLYRLIHRPNIQIDEKRRLRMALDVAQGMNYLHSSNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVFSFGVILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKEIDPDAAKIISECWQNDPNLRPSFGELMVALKSLQRLLVSPL*

Protein Length: 431

Fln nts: AGGGAACAAGACAAAAGAGAGTAACAGAGGCGAAGGATTTGGATAGTACTTCTTTG_-_ATGGAAATTTCAACTTCAGATGCTGTACATATTCCTGTTCCCAGTATTCCAGATATAAACAATACTCATATTTCATCAATCCCTTCTCGAGGAATGGGAACCTCATCTCAACATCCTGAAATGCGTGGAAATCTTCCAGTTGCTTCAGCATTTGCTGCTACATCGTCTGTTGTTGCTTTGCCACAGGTCATAGCAACAAGTAAACGTAATGTTCTTAATGAAGCTCCTGAAAATGTTAAAAAAGATTCAGACACATCTGTTGCTCTTGCAAATCAAAATCATGTAGGACATAGTGATGCCTCGTTACACAATTTAGTGGGTAGGGAGAGTGCTCACAGCAGAGGTGAAAGAAGACCTTCTGACTCTGAAAGTCAGGTTGTTGGGTTAGTAGATTCCAGGGAAAATTCAGAAGATGAATCTGTGTCTTCATCTAATACGCATAATACACACCCTATAATGGATGATGTTGCAGAATGTGAAATCCGATTGGAATATCTGCAAATTGGTGAACGCATTGGACTAGGTTCTTATGGAGAAGTTTATCACGCAGACTGGAATGGCACGGAAGTTGCAGTTAAGAAGTTTCTTGATCAAGATTTTTCAGGAGATGCATTAGAGCAGTTCCGCAGTGAAGTGCGAATCATGCGAAGATTGCGTCACCCAAATATTGTTCTTTTTATGGGAGCTGTCACTCGGCCTCCAAATCTCTCTATTTTGACTGAGTTTCTTCCAAGAGGAAGCTTGTATAGGCTAATCCACCGCCCTAACATTCAAATAGATGAGAAGCGGCGTTTACGAATGGCTCTTGATGTGGCTCAAGGAATGAATTATTTGCACAGTAGCAATCCCGTAATAGTTCATCGAGATCTGAAGTCGCCAAATCTTCTCGTTGATAAAAATTGGGTGGTCAAGGTTTGTGATTTTGGCTTGTCACGCTTGAAGCACCATACATTCCTGTCTTCAAAGTCAACTGCAGGAACGCCGGAATGGATGGCACCAGAAGTTCTGCGGAATGAACCATCGAATGAAAAGTGTGATGTTTTTAGCTTTGGTGTGATCTTATGGGAGTTGGCTACTTTGCGTATGCCATGGAGTGGAATGAATCCCATGCAGGTAGTTGGTGCTGTTGGTTTTCAGAATCGTCGCCTTGATATTCCCAAGGAAATTGATCCAGATGCCGCAAAGATTATTTCTGAATGCTGGCAGAATGATCCAAATCTACGGCCTTCATTTGGAGAGCTTATGGTTGCTCTCAAGTCTTTGCAGAGGCTGCTTGTTTCACCTCTGTGA___GAAACATGGCCTTGTCCTTTTCACCACAATAAGAAGCTGTAACTATCCAGATACGGATAAGATGATATGCTCTGAGAAACCTTAGAGCTATTGTTTGGTCCCTAAATCTAGTCGAGGGAAACAAATGATGCTGAAATTATGGTGCTGAATAGTGATATTCCTGGGGGTTGTCTTAAACATGAGCTATGGTTCAGTATATGCGTGCCTGAACCAAAAACAGCTAAACTCTATTAAAGGAAATGTAAAAGACCATGGCTATCCCATTCAGCAACTAAGAAAATTTTGGGAAATGGTTCCTTGAGAATTGTCAATTCCAAAACAAGTTCGAGTGTTGCGTTGGTCAAGTTTCTATATACAAAATTCATACAAAGTACACTGAAAGACCTTTCTGATTGTTTCATAAGTGGGTACGGCGGCTGTGCGAAGCACATAGGAAGTCAAACTTTTTCTGATTCTTCTGTAAATGTTAGTATAGGCCATGTCCATTCAAAACAGGATGGGCACGCGGAAGTTTCTTGTTTGTCATATAAATTGCTTTGACAGAGGGTCTTTTGACGCCTGGCAGTTTGCTTTGCTCTGTATACAGGCTTCTACTCTTCCGCTTTGTCAAATTTATAAATGTAGAAAATTGTCTGTGTACAGACAATCATGCCAGTTAATATGGATGATGTAATTTGATCTTGTACACAATTTACATTATTGCACCAAGAGAAGCGAAGTGCTTTCCAGTCTGGGTGGGAGAGATGCTGATGTAATGTATGTATGTAGATACTAATAAAATAAATGAAATGGAAAATGTTTAATGTACT

Fln Alignment:

sp_v1.1_unigene4495___EIRLEYLQIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGDALEQFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSILTEFLPRGSLYRLIHRPNIQ--IDEKRRLRMALDVAQGMNYLHSSNPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVFSFGVILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKEIDPDAAKIISECWQNDPNLRPSFGELMVALKSL
D5A8V0______________EIPWSDLVLKERIGAGSFGTVHHADWHGSDVAVKILIEQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPWSGLNAAQVVGAVGFQNRRLQIPKDVKPDIAAIIEACWANDSRKRPSFASIMELLKPL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2004	25		75		0.996473
2120	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
43	55	TACA TACA TACA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain