SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4474

Length: 1446 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4474 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase bri1, putative n=1 Tax=Ricinus communis RepID=B9ST85_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	bri1 protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	identical protein binding	GO:0042802	Molecular Function	0.0	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 63 aas, putative chimeric sequence, your sequence is shorter than subject: 200 - 946

Fln protein: CIDLGCHSS*PWLSL*LSGNFLGDLLGNLHSLRVLLLPYNNLTGSIPLSLANCSRLEVLDLSSNIISGTIPPGICNPSSSLQRLSLSNNLLTGSLPPELANCRNLRRIDFSFNNLNGTIPAILGSLTYLQDLVIWLNNLEGQIPDKICDSGSLADSHIEQQRSDRRSPIGSRKLSKLVVDISGQQQIEWYHTIFTGSFG*

Protein Length: 201

Fln nts: TGTATCGACCTTGGCTGTCACTCGTCTTGACCTTGGCTGTCACTTTAGCTTTCTGGCAATTTTCTGGGTGATCTGCTTGGGAACCTTCATTCACTGAGGGTGTTGTTGCTGCCCTACAACAATCTGACAGGGTCAATACCACTTTCCCTGGCCAACTGCTCAAGATTGGAGGTTCTAGACTTGAGCTCAAACATCATTTCTGGAACAATCCCACCTGGTATCTGTAACCCTTCATCTTCCTTGCAAAGGCTGTCTCTGTCCAACAATCTGCTGACTGGATCACTGCCACCTGAGCTTGCCAATTGCCGGAATCTCCGCAGAATAGATTTCAGCTTCAATAACTTGAATGGGACCATTCCTGCAATATTGGGTTCATTGACATATTTACAAGACCTCGTCATATGGCTCAACAACCTGGAAGGACAAATTCCTGACAAAATTTGCGACAGTGGAAGCTTGGCAGACTCTCATATTGAACAACAACGCTCTGACAGGAGAAGTCCCATCGGCTCTCGGAAATTGTCAAAACTTGTTGTGGATATCTCTGGCCAGCAACAGATTGAGTGGTACCATACCATCTTCACTGGGTCATTTGGATAA___GCTGGCAATACTTCAGTTGGGTAACAACTCTCTTTCGGGTGCAATTCCTCCAGAGCTGGGCAACTGCAGCAGTTTGATATGGTTGGATCTAAATAGTAACATGTTGAACGGTTCCATACCTGCAGAGTTGTCACAGAAATCGGGTCATGTTTTAGCTGGAAATGTAGCCGGAAAATCGTTTGCTTTTGTGAGAAATGAGGGTGGAACGACCTGTCGGGGTGCTGGCGGGCTCCTGGAATTTGCTGGGATTCGGTCTGAGCAACTCCTGCTTTCACCTGTGTTACATTCATGTGAATTCACCAGAGTTTACCTGGGCACTACAGTGTACAAGTTTACAGACAATGGTACACTCATTTACTTGGACTTGTCCTACAACTCCCTTTCAGGACCTATTCCAGAAGGTTTTGGATCTATGTATTATGTACAAGTGTTCAATTTTGGACATAATCTTCTTAGTGGGATAATTCCATCCAGCTTGGGAGGTTTAAAGCAAGTCGGTGTCGTAGACTTGTCTCACAATATGCTACAGGGATTTATCCCAGGATCATTGGGAGGGCTATCATTTTTAAGCGATTTAGATCTATCCAACAACAATCTAAGTGGACCTATCCCTTTGTCCGGTCAGCTCATGACATTCCCTGCTTCCAGATATGAGAATAATTCGGATCTATGTGGATTACCCCTTCCACCATGTAACTCTAATGAACCCACAAATGGAGAAGAACCTGATCAGCCATCCTCAGGTCACCGTAATAGAAGAAATGGGGCATTAGCAGGAAGTGTGGCTATGGGACTAGTGCTTGCTCTCTCATGCGTCTTTGGACTCATTGTTATTGCTGTGAAAAC

Fln Alignment:

sp_v1.1_unigene4474___NFLGDL---LGNLHSLRVLLLPYNNLTGSIPLSLANCSRLEVLDLSSNIISGTIPPGI-------CNPXXXXXXXXXXXXXLTGSLPPELANCR----NLRRIDFSF--------------NNLNGTIPAILGSLTYLQDLVIWLNNLEGQIPDKICDSGSLADSHIEQQRSDRRSPIGSRKLSKL-VVDIS
C0PTA1______________NFTGELPESLSFLNQLSVLSVGYNNLHGGIPKGITNLTMLHVLDLSNNKLSGKIPSDLQKLQGFAINVSATHIYMLYEGRLGKIVLLPSNSIIEEMTIDIKRHMYSLPYMSPTNTIFYLSNNNLTGEIPASIGCLRSLRLLNLSGNQLEGVIPASLGNISTLEELDLSKNHLKGEIPEGLSKLHELAVLDVS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
997		80		20	0.995493
1020	83		16		0.994512
1024		16	83		0.994512
1025		16		83	0.994512
1026		83		16	0.994512
1027		83		16	0.994512
1170		85		14	0.993533
1171		85	14		0.993533
1175		85	14		0.993533
1181	85	14			0.993533
1182		14		85	0.993533
1183	14			85	0.993533
1184	14		71	14	0.984337
1185			28	71	1.0
1186	14			71	0.984337
1189		14	85		0.993533
1192	85		14		0.993533
1193	14		85		0.993533
1194	71	28			1.0
1195		14	85		0.993533
1197	16	83			0.994512
1198	83		16		0.994512
1200		83		16	0.994512
1202	16			83	0.994512
1203		20		80	0.995493
1204			16	83	0.994512
1205	16		83		0.994512
1207	83		16		0.994512
1393	33	66			0.997452
1394		66	33		0.997452
1395	66			33	0.997452
1398	66	33			0.997452
1402		33		66	0.997452
1403	33		33	33	0.997753
1404	66		33		0.997452
1405	33		33	33	0.997753
1408		33	66		0.997452
1410		66		33	0.997452
1411	33		33	33	0.997753
1412	33		66		0.997452
1414		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain