SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4466

Length: 1023 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4466

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	at4g11790 t5c23_220	-	-	57%

Source	InterPros	Term	Type	Identity
Blast2go	Ran binding domain	IPR000156	-	57%
Blast2go	Pleckstrin homology-like domain	IPR011993	-	57%
Blast2go	Nuclear pore complex, NUP2/50/61	IPR015007	-	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA2

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 323 - 356

Fln protein: MHSSYMNNTPIKSHSMERARERKRFGQMSDKRKRRTDENSSSSDCNDQTFRPKRITAVPPFDVQRAESSRQHVRALNTQFASWVQKQLKDHPDELWQDGVQDYIKHASEILVKFSDVVEWINKNASSIAENVPANISKEGFPSIEKQVQDEDNKSEISFVANDDSGKPGLGPPSTGSWSFGSVSANQSSLTTGPWSFGLTSANQNSSAGFFSHLPVPPIATGGTSNDQEEESETVDEPPSPSVKRTEEPGTVVVHEVKCKLYVKSDNSGDKPWKDMGMGQLCIKCKEDVKRGTKEAKAKVVVRNDVGKVLLNALLYPNIRLNM

Protein Length: 324

Fln nts: ATGGGGGAGTGAGAAAATGTCGCTCAAATATTCGTGATAGCTGCACAGTACGA_-_ATGCACAGTTCATATATGAACAACACCCCAATAAAATCCCATTCCATGGAAAGGGCACGGGAGAGGAAAAGGTTCGGACAAATGTCAGACAAGAGAAAGCGCCGCACAGACGAGAATTCTTCTTCTTCAGACTGCAATGATCAGACTTTTCGACCAAAACGGATAACAGCAGTTCCCCCCTTCGATGTTCAAAGGGCTGAATCATCTAGGCAGCATGTGAGAGCACTCAATACTCAATTTGCAAGTTGGGTGCAAAAACAACTCAAAGATCATCCTGATGAGCTATGGCAAGATGGTGTGCAAGATTACATCAAGCATGCTTCAGAGATTTTGGTAAAATTCAGTGATGTGGTAGAGTGGATTAACAAAAATGCAAGCTCAATTGCAGAAAATGTTCCTGCAAACATATCTAAGGAAGGTTTCCCAAGTATAGAGAAGCAGGTTCAAGATGAAGACAACAAATCAGAAATTTCATTTGTTGCTAATGATGACTCAGGGAAGCCAGGTTTGGGACCACCATCTACAGGATCATGGAGTTTTGGATCAGTTTCTGCTAATCAAAGTTCACTGACAACAGGACCATGGAGTTTTGGATTGACTTCTGCCAATCAGAATTCATCAGCAGGGTTTTTTTCTCATCTGCCAGTTCCACCTATTGCAACGGGGGGAACATCAAATGACCAAGAAGAAGAAAGTGAAACTGTGGATGAACCTCCAAGCCCTTCCGTGAAGAGGACCGAGGAGCCCGGAACTGTTGTAGTTCATGAAGTCAAGTGCAAATTATATGTGAAGTCTGACAACAGTGGAGATAAACCTTGGAAAGATATGGGCATGGGACAGCTTTGTATCAAGTGCAAAGAGGATGTTAAAAGAGGAACAAAGGAGGCGAAGGCAAAAGTTGTGGTCCGAAATGATGTTGGAAAAGTGCTGCTTAATGCACTTCTGTATCCAAATATCAGATTGAACATGC

Fln Alignment:

sp_v1.1_unigene4466___MSDKRKRRTDENSSSSDCNDQTFRPKRITAVPPFDVQRAESSRQHVRALNTQFASWVQKQLKDHPDELWQDGVQDYIKHASEILVKFSDVVEWINKNASSIAENVPANISKEGFPSIEKQVQDEDNKSEISFVANDDSGKPGLGPPSTGSWSFGSVSANQSSLTTGPWSFGLTSANQNSS-AGFFSHLPVPPIATGGTSNDQEEESETVDEPPSPSVKRTEEPGTVVVHEVKCKLYVKSDNSGDKPWKDMGMGQLCIKCKEDVKRGTKEAKAKVVVRNDVGKVLLNALLYPNIRLNM
C0PRA2______________MSDKRKRRTEENPSSSDCNDQAFRPKRITAVPPFDVQRAESSRQHVRALNTQFASWVQKQLKDHPDELWQDGVQDYIKHASEILVKFSDVVDWLNKNASSIPQNVPVSMSKGGLPSIEKQVPNEDNKSEVSFLAKDDSRKSGLGLPSTGLWSFGLISANQSSPATGSWSFGLTSANQNSSAAGLSSHLPVPPIATGGTSNDQEEDSETVDEPPSPSVKRTEEPGTVVVHEVKCKLYVKPDNSGDEPWKNMGMGQLYIKCKEDVKRGTKEAKATIVIRNDVGKVVLNALLYPKIKLSI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
964	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
170	181	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain