SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4460

Length: 1728 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4460 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide pyrophosphatase/phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9RCW2_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	75%
Blast2go	Purple acid phosphatase-like, N-terminal	IPR008963	-	75%
Blast2go	Purple acid phosphatase, N-terminal	IPR015914	-	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ97

Fln msg: your sequence is shorter than subject: 424 - 641

Fln protein: MFLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSLGWRDPGYIHDAVMQGLEPGKRYFYQVGSDEGGWSSIQSFVSLDKDSDETIAFLFGDLGVSVPYKTFLWTQEESKRTVKWLKRDLEELGDKPTFISHIGDISYARGYAWLWDAFFTQIEPLASKVPYHVCMGNHEYDWPLQPWKPEWSTRLYGTDGGGECGVPYSLKFQMPGDSSFPTGNAAPSTKNLYYSFDLGVVHFLYMSTETNDLRGSDQYAFIEQDLKKVDRNKTPFVVFQGHRPMYTTDNAVSERPLREKMIEHLEPLLVKYRVNLVLWGHVHKYEKFCPMKNFSCGSMDSEADLPIHVVIGMGGQDWQPIWEPRPDHPTDPIFPQPVRSLYRSSELGYTRLYATRKTLTLSYIGNHDGQVHDVLEIRLKGI*

Protein Length: 425

Fln nts: ATGTTCCTGACAAGCGATGACATAAAGAGCTATGCCAGATATGGGTTAGATGAGGGGAAGCTGAATAGCGTGGCAAGGGCTCAGTCCGTCACCTATACGCGCCCGGACATGTGCGATGAACCTGCTAACACAAGTTTGGGATGGAGGGATCCCGGGTATATTCATGATGCTGTAATGCAGGGACTGGAGCCAGGCAAGCGCTATTTTTATCAGGTCGGAAGCGATGAGGGTGGCTGGAGTTCAATTCAGAGTTTTGTATCTTTAGATAAAGATTCAGACGAAACTATTGCATTCCTCTTTGGTGATTTGGGAGTGTCTGTACCCTACAAAACTTTTCTCTGGACCCAGGAAGAGAGCAAGCGTACAGTCAAATGGCTAAAGCGCGACCTTGAAGAGCTTGGGGATAAACCTACATTTATTTCTCATATTGGTGACATCAGCTATGCCAGAGGCTATGCATGGCTATGGGATGCATTCTTTACTCAGATTGAGCCTCTTGCATCCAAGGTTCCTTATCATGTATGCATGGGAAATCATGAGTATGACTGGCCATTACAGCCGTGGAAACCTGAATGGTCAACCAGATTGTATGGAACTGACGGAGGTGGTGAATGTGGGGTCCCTTACAGCTTAAAGTTTCAGATGCCCGGTGATTCTTCTTTTCCAACTGGAAATGCTGCCCCATCAACAAAAAATCTCTACTATTCATTTGACCTGGGAGTTGTACATTTCTTGTATATGTCCACTGAAACTAATGACTTACGAGGAAGTGATCAATATGCTTTCATAGAGCAAGACCTGAAAAAGGTTGATAGAAACAAGACGCCATTTGTAGTATTTCAAGGTCACCGTCCAATGTATACCACTGACAATGCAGTAAGTGAACGGCCCCTACGAGAAAAAATGATTGAACACTTGGAGCCTCTGCTAGTTAAGTATAGAGTCAACCTGGTCTTATGGGGCCATGTTCACAAGTATGAGAAGTTTTGTCCAATGAAAAACTTTTCATGTGGAAGCATGGACAGTGAAGCTGATCTTCCCATACATGTTGTAATTGGAATGGGTGGACAAGACTGGCAACCAATTTGGGAACCTAGGCCTGATCACCCAACAGATCCTATCTTTCCACAACCTGTTAGATCTCTTTACCGAAGCAGCGAGCTTGGTTATACAAGACTATATGCAACTAGGAAAACATTGACACTTTCCTATATTGGGAACCATGACGGACAGGTCCATGATGTTTTAGAAATACGTTTGAAAGGTATTTAG___AAATCTTCTAACTGGATTTAGTTTATGAAGGCGGGCAGCTTATTCCTGGTTGGAGCTTTACTCGGTTTTATTGGTGGATACCAATTCTACTCCAAAAGAGACGTGTTCAACGGACAGGGCTGGAGAGCGTTGAGCATTTATAGACAGCATAGAAGACGAAGATGCCATGCTAGCATAAAAAATACCTACTAAAACAGGTTTTCTGGATGGGTACCTATTTATAATCTAGAAAATAAACATGATCAGTGGACAGGGCTTAATGCTTATGAACCTTAATGCATATCATGCCATGAGAGCATGGAAGATAAAGTAAACTATATTACTATCCAAAAGCCATCAGAAGCAATTAATAGACTGCAAATACTATGGTTATAACTTATAATGTAGCAGAGAAAAGCAAGTCAGTTGGCCACGCTGAAGCATTTTTATCAAATAATTCCTCTAATAGCTATAGCA

Fln Alignment:

sp_v1.1_unigene4460___FLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSL--GWRDPGYIHDAVMQGLEPGKRYFYQVGSDEGGWSSIQSFVSLDKDSDETIAFL-FGDLGVSVPYKTF--LWTQEESKRTVKWLKRDLEELGDKPTFISHIGDISYARGYAWLWDAFFTQIEPLASKVPYHVCMGNHEYDWPLQPWKPEWSTRLYGTDGGGECGVPYSLKFQMPGDSSFPTGNAAPSTKNLYYSFDLGVVHFLYMSTETNDLRGSDQYAFIEQDLKKVDRNKTPFVVFQGHRPMYTT-------DNAVSERPLREKMIEHLEPLLVKYRVNLVLWGHVHKYEKFCPMKNFSC--------GSMD----SEADLPIHVVIGMGGQDWQPIWEPRPDHPTDPIFPQPVRSLYRSSELGYTRLYATRKTLTLSYIGNHDGQVHD
B8LQ97______________WISGDGKPQYVHYG--DGKL---ALSTVATFTPNDLCDSFVSPAVDFGWHNPGFIHTALLDGLLPSKSYLYKYGSDEVGWSTTTIFSTPPAVGSNQLTFVTYGDMG-KAERDGFGEHYIQPGALQVIDAVEREVH--AGKIDMILHIGDISYATGFLAEWDFFLEMIGPVASRVPYMTAIGNHERDFPKS------GSYYEGPDSGGECGVPYEMYFQMPVN-----GKDKP-----WYSMEHGPVHFTIMSTEHPWDIGSDQFNWIKADLASVDRKRTPWLIFAGHRPQYSSLEGGFIFSTIIPAVDVHFRLV--IEPLLLFYQVDLALWGHVHNYERTCAVNNSQCLNYPMRDHGGIDNYKSSTYSAPVHVIIGMSGFELDSF-----------ITMTKSWSLVRISEFGYVKVHATTGKILVQF-KLPDGRIAD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
187	80		20		0.995493
189	20		80		0.995493
226	80	20			0.995493
256	85	14			0.993533
384		80	20		0.995493
388	80		20		0.995493
389	80			20	0.995493
390			20	80	0.995493
392	80	20			0.995493
394	80		20		0.995493
397	20		80		0.995493
401	80	20			0.995493
403	80	20			0.995493
406			20	80	0.995493
1511		75		25	0.996473
1528		50	50		1.0
1543		25		75	0.996473
1545		50	50		1.0
1558		75	25		0.996473
1591		25		75	0.996473
1705		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain