SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4458

Length: 2290 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4458
CGTCGTGACCTTGGCTGTCAGTGGGCAGGGAATTGGAAGGTAGCCTTTGCATTCATCCAAACCCCTCCTCACATTTTCTGATAATGTGGACTTCACGATCTTGACATCTTGGAGATTTATAAGCTGGACGAACTGTACTACCATCGTGGCTGTTCAGGGCTTTAAGAGATTCTTTCTTCCCCCCTTGGAAAAGGCAGGTTTGTTTCAAAGCAATAAGTGAAATCCCTTGTAAACTGGCGGGGCTTTCCATTCTGACGCCCTGATCTCGTTAATGTCGCCACTTCTGATTTTTTGTAGTAAGGTCTGAAGAATCCTCAGAAGAGCATGGCAGGGTATCATCAGGAATCTGCTGCTGGTTTTTGCCAGTAAAAGACATCGAAAAATCTGAGATCGTATTTATAAGATTCTCGAAGGGACAAGGTCACGGGTTTCCTACACTTATCCAGACTTTAAAATTCCGATTGCTTTCGACCTTCAGCGGCCCTGAGCTTTGCTTTCCCGGTCTTGGAATTGACAATCTGAGGCTGAATCCGGATTGTAAGGCGCTGCTTTAATTACAGGGAGCGAACAGCAAATCGTGAATAGGGGCATTTATGGTGAGAGATAAAACAGGGGGAATGAGCCTTAATAAGAACAGAATTGGAAAATATGAGCTAGGACGGACATTGGGAGAGGGAAGTTTTGCCAAAGTCAAGTTCGCAATTAATGTGGAAACAGGGCAGAGCTATGCCGTGAAAATTCTGGACAAGGACAAGGTTTTCCACTACAAGTTTGTCGAACAGATCAAGCGTGAGATATGCACCTTGAAGCTGATCAAGCATCCAAATGTTGTGAGATTATACGAGGTATTGGCAAGTAAGAAGAAGATATATATTGTTCTTGAATTTGTCACAGGGGGTGAATTGTTCGACAAAATCTCGTATAATGGCAAGCTGGAGGAAAACGAGGCAAGAAAGTATTTCCAGCAGCTTATTGATGCCGTAGGATATTGTCACAGTAGGGGTATTTACCACAGAGATTTGAAGCCGGAAAACGTTCTGCTGGATGCGAAGGGAAATGTGAAGATATCTGACTTTGGACTCAGCGCACTGCCTCAGCAAGTGAGGCCAGATGGGTTACTGCATACTACTTGTGGAAGCCCCAATTACGTGGCACCTGAGGTGATTGCTGACAGAGGATACGATGGTGCTACTGCTGATCTTTGGTCTTGCGGTGTCATACTCTTTGTTCTTTTGACAGGCTGGTTGCCATTTGAAGACAGAAACCTTGCAGTGCTGTATCAGAAGATCTTCAAAAGCGATTTCAAGTGCCCAAATTGGCTATCTCTTGGTGCTCGCAAATTGATTACAAGAATACTGGACCCCAATCCAAATACTCGCATAACTATACCAGAGATAGTGGAAGATAAGTGGTTTAAGGAAGGCTATTCCCCGACTAAGTTTGTGGAAGAGGATACTTGTCTGGATGATGTTGATGCAGCTTTTACAAACTCGGAGGACCATATGCTGACGGAGGAGAGCGGGCCAATTCTGATGAACGCTTTTCAGTTAATAGCGATGTCCCGCAGCCTGGATCTCTCCGGTTTGTTTGAAGAAGAGGATGCTGCTGAGAGAAAGACGAGATTCACATCCATGTACCCAGCAAAGGATATCGTCCACAAAATAGAGGAAACGGTCAGAGCGATGGGGTTTCAAGTCCAAAGAAAGAACAACAGGCTAAATTTACTGCATATCGATCCGAAGTCGAAGGTTAACAGCCACCTTTCCGTTGCAGCTGAGGTGTTCGAGGTGAACCCGTGTTTGCACGTGGTAGAGCTCAGGAAATCTGCCGGTGATCCAGCCCAATACAGACAGCTGTGCATAAAGTTATCCAGCGCTCTGAGCCTGCAACAAGATGATAACACGTGTAGGGATAAAGGAGGATTAATGTTGCCGTGTCTTCCCGCTTGCCCTTGTCCTTGACTGTTCGGCTCGGTACGGCACGGCACGCGGGGCGCGGCGTTCTCTAAATGGAAAATCAATATCCGTTAATTAAATATGGCGTTACGACCTGTTACTACTTTGGACCTTATGGTGTCTTCTGTATAATGTAAGGACTTGGATTCTCTTCGGTATATTGTCAAGACTTGGATTCTAAACTGAGGCCAATTTCTGAGATTCGGCGGGTTTGGAATCTGTACTAATGAGGATACAATTATTAGAAACAGACAAAACACAAGTCAAAAAGGATGTTTGTCTGAGTTTGCTTTAATACTTGCGTGTAGTGCATGCTCAATTTTGTCCACCTTTGC

Ace file of the UniGene sp_v1.1_unigene4458

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	cbl-interacting serine threonine-protein	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	78%
Blast2go	Kinase-associated KA1	IPR001772	-	78%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	78%
Blast2go	NAF domain	IPR004041	-	78%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	78%
Blast2go	Protein kinase-like domain	IPR011009	-	78%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	78%
Blast2go	NAF/FISL domain	IPR018451	-	78%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP7

Fln msg:

Fln protein: MVRDKTGGMSLNKNRIGKYELGRTLGEGSFAKVKFAINVETGQSYAVKILDKDKVFHYKFVEQIKREICTLKLIKHPNVVRLYEVLASKKKIYIVLEFVTGGELFDKISYNGKLEENEARKYFQQLIDAVGYCHSRGIYHRDLKPENVLLDAKGNVKISDFGLSALPQQVRPDGLLHTTCGSPNYVAPEVIADRGYDGATADLWSCGVILFVLLTGWLPFEDRNLAVLYQKIFKSDFKCPNWLSLGARKLITRILDPNPNTRITIPEIVEDKWFKEGYSPTKFVEEDTCLDDVDAAFTNSEDHMLTEESGPILMNAFQLIAMSRSLDLSGLFEEEDAAERKTRFTSMYPAKDIVHKIEETVRAMGFQVQRKNNRLNLLHIDPKSKVNSHLSVAAEVFEVNPCLHVVELRKSAGDPAQYRQLCIKLSSALSLQQDDNTCRDKGGLMLPCLPACPCP*

Protein Length: 457

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGGCAGGGAATTGGAAGGTAGCCTTTGCATTCATCCAAACCCCTCCTCACATTTTCTGATAATGTGGACTTCACGATCTTGACATCTTGGAGATTTATAAGCTGGACGAACTGTACTACCATCGTGGCTGTTCAGGGCTTTAAGAGATTCTTTCTTCCCCCCTTGGAAAAGGCAGGTTTGTTTCAAAGCAATAAGTGAAATCCCTTGTAAACTGGCGGGGCTTTCCATTCTGACGCCCTGATCTCGTTAATGTCGCCACTTCTGATTTTTTGTAGTAAGGTCTGAAGAATCCTCAGAAGAGCATGGCAGGGTATCATCAGGAATCTGCTGCTGGTTTTTGCCAGTAAAAGACATCGAAAAATCTGAGATCGTATTTATAAGATTCTCGAAGGGACAAGGTCACGGGTTTCCTACACTTATCCAGACTTTAAAATTCCGATTGCTTTCGACCTTCAGCGGCCCTGAGCTTTGCTTTCCCGGTCTTGGAATTGACAATCTGAGGCTGAATCCGGATTGTAAGGCGCTGCTTTAATTACAGGGAGCGAACAGCAAATCGTGAATAGGGGCATTT_-_ATGGTGAGAGATAAAACAGGGGGAATGAGCCTTAATAAGAACAGAATTGGAAAATATGAGCTAGGACGGACATTGGGAGAGGGAAGTTTTGCCAAAGTCAAGTTCGCAATTAATGTGGAAACAGGGCAGAGCTATGCCGTGAAAATTCTGGACAAGGACAAGGTTTTCCACTACAAGTTTGTCGAACAGATCAAGCGTGAGATATGCACCTTGAAGCTGATCAAGCATCCAAATGTTGTGAGATTATACGAGGTATTGGCAAGTAAGAAGAAGATATATATTGTTCTTGAATTTGTCACAGGGGGTGAATTGTTCGACAAAATCTCGTATAATGGCAAGCTGGAGGAAAACGAGGCAAGAAAGTATTTCCAGCAGCTTATTGATGCCGTAGGATATTGTCACAGTAGGGGTATTTACCACAGAGATTTGAAGCCGGAAAACGTTCTGCTGGATGCGAAGGGAAATGTGAAGATATCTGACTTTGGACTCAGCGCACTGCCTCAGCAAGTGAGGCCAGATGGGTTACTGCATACTACTTGTGGAAGCCCCAATTACGTGGCACCTGAGGTGATTGCTGACAGAGGATACGATGGTGCTACTGCTGATCTTTGGTCTTGCGGTGTCATACTCTTTGTTCTTTTGACAGGCTGGTTGCCATTTGAAGACAGAAACCTTGCAGTGCTGTATCAGAAGATCTTCAAAAGCGATTTCAAGTGCCCAAATTGGCTATCTCTTGGTGCTCGCAAATTGATTACAAGAATACTGGACCCCAATCCAAATACTCGCATAACTATACCAGAGATAGTGGAAGATAAGTGGTTTAAGGAAGGCTATTCCCCGACTAAGTTTGTGGAAGAGGATACTTGTCTGGATGATGTTGATGCAGCTTTTACAAACTCGGAGGACCATATGCTGACGGAGGAGAGCGGGCCAATTCTGATGAACGCTTTTCAGTTAATAGCGATGTCCCGCAGCCTGGATCTCTCCGGTTTGTTTGAAGAAGAGGATGCTGCTGAGAGAAAGACGAGATTCACATCCATGTACCCAGCAAAGGATATCGTCCACAAAATAGAGGAAACGGTCAGAGCGATGGGGTTTCAAGTCCAAAGAAAGAACAACAGGCTAAATTTACTGCATATCGATCCGAAGTCGAAGGTTAACAGCCACCTTTCCGTTGCAGCTGAGGTGTTCGAGGTGAACCCGTGTTTGCACGTGGTAGAGCTCAGGAAATCTGCCGGTGATCCAGCCCAATACAGACAGCTGTGCATAAAGTTATCCAGCGCTCTGAGCCTGCAACAAGATGATAACACGTGTAGGGATAAAGGAGGATTAATGTTGCCGTGTCTTCCCGCTTGCCCTTGTCCTTGA___CTGTTCGGCTCGGTACGGCACGGCACGCGGGGCGCGGCGTTCTCTAAATGGAAAATCAATATCCGTTAATTAAATATGGCGTTACGACCTGTTACTACTTTGGACCTTATGGTGTCTTCTGTATAATGTAAGGACTTGGATTCTCTTCGGTATATTGTCAAGACTTGGATTCTAAACTGAGGCCAATTTCTGAGATTCGGCGGGTTTGGAATCTGTACTAATGAGGATACAATTATTAGAAACAGACAAAACACAAGTCAAAAAGGATGTTTGTCTGAGTTTGCTTTAATACTTGCGTGTAGTGCATGCTCAATTTTGTCCACCTTTGC

Fln Alignment:

sp_v1.1_unigene4458___NRIGKYELGRTLGEGSFAKVKFAINVETGQSYAVKILDKDKVFHYKFVEQIKREICTLKLIKHPNVVRLYEVLASKKKIYIVLEFVTGGELFDKISYNGKLEENEARKYFQQLIDAVGYCHSRGIYHRDLKPENVLLDAKGNVKISDFGLSALPQQVRPDGLLHTTCGSPNYVAPEVIADRGYDGATADLWSCGVILFVLLTGWLPFEDRNLAVLYQKIFKSDFKCPNWLSLGARKLITRILDPNPNTRITIPEIVEDKWFKEGYSPTKFVEEDTC-LDDVDAAFTNSEDHMLTE-----ESGPILMNAFQLIAMSRSLDLSGLFE-EEDAAERKTRFTSMYPAKDIVHKIEETVRAMGFQVQRKNNRLNLLHIDPKSKVNSHLSVAAEVFEVNPCLHVVELRKSAGDPAQ----YRQLCIKL
A9NWP7______________NKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDKGAILRHKMVDQIKREICVMKLVRHPNIVHLHEVLASRTKIYIILEFVTGGELFDKIVHQQRLSENESRKYFQQLIDAVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPQQLREDGLLHTTCGTPNYVAPEVLSHKGYDGALADVWSCGVILYVLMAGFLPFDEDDLTSLYRKINEADFSCPTWFSPGAKSLISRILDPDPQTRIKVSGIREDDWFRKNYVPVRLYEDDDVNLDDVQAVFDDSEDQYVSEQREAKELGPSMMNAFELITLSQGLNLSALFETQQDHVKRQTRFISRKPAKVIISKIESAVESMGFKIQVSNYKMRIEGLTLNK--TGHISVALEVFEVAPSLYMVDVRKAAGDTLEYHRFYKALCAQL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
480	50		50		1.0
499	20			80	0.995493
501		80	20		0.995493
502		80	20		0.995493
503		80	20		0.995493
678	28		71		1.0
764	25	75			1.0
832		16		83	0.994512
1023			12	87	0.992554
1024			12	87	0.992554
1063			11	88	0.923564
1226	14	85			0.993533
1228			16	83	0.994512
1229			16	83	0.994512
1257			16	83	0.994512
1258			83	16	0.994512
1585	10		90		0.90298
1675	88		11		0.923564
1715	55		44		1.0
1805			10	90	0.90298
1875		16	83		0.994512
1920	80	20			0.995493
1922			80	20	0.995493
1923	80	20			0.995493
1929	80		20		0.995493
1930	80	20			0.995493
1934		20		80	0.995493
1935	20		80		0.995493
1941		60		40	1.0
2177			35	64	1.0
2193		35		64	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain