SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4434

Length: 1760 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4434

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase, putative (EC:2.7.11.1); K08850 aurora kinase, other [EC:2.7.11.1]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	histone phosphorylation	GO:0016572	Biological Process	92%
Blast2go	histone kinase activity (H3-S10 specific)	GO:0035175	Molecular Function	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	spindle	GO:0005819	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	92%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	92%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	92%
Blast2go	Protein kinase-like domain	IPR011009	-	92%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	92%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	92%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX61

Fln msg:

Fln protein: MVMAPAVNANANPDGTMAQVPQKNEKEDAKKDERRWTLNDFDIGKPLGRGKFGNVYLAREKKSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLFGYFYDQSRVYLILEYAAKGELYKELQRCKCFNEKRAATYIASLARALIYCHEKHVIHRDIKPENLLVGIQGELKIADFGWSVHTFDRRRTMCGTLDYLPPEMVENKEHDAGVDIWSLGVLCYEFLYGFPPFEAKEHSDTYKRIVKVDLKFPPRPFVSDAAKDLIRQLLVKDSSQRLPLLKVLQHPWIFQNADPDGVYKTGH*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTAACCGTTGGGAGATGGGTTCCACCATATAGCTAAAGAGGAACGTCTTTTTTAAATGTTTAAACGTTTGTATTTGGCAAGTTGAATAAATCGGTCAACCAGATTCCTGGGACGATGGAGTTTTAGTTGGATTGATTTTTTGTGGGTTTAGAATCAGAGAATTCGACCGTTAGCCTGGATCACCAGTCAGCCCTCTTGTTAGCCTCCCTTCCCTGTTTTTCCTATTCTCATTTGATTGTTCTATTTATCCCCTCATCTGGGCTGATCTCAGATTGCCTTCCAACCAACCCATTCATTCACATTGGTAGGTATTCAAGA_-_ATGGTGATGGCTCCAGCCGTCAATGCCAATGCCAACCCTGATGGAACAATGGCTCAGGTTCCTCAGAAGAACGAGAAGGAGGATGCTAAGAAGGATGAAAGACGCTGGACTCTCAACGATTTCGACATTGGAAAACCTCTGGGCCGCGGGAAATTTGGCAATGTATATCTTGCCAGAGAGAAGAAGAGTAAGTATGTTGTGGCTTTGAAAGTTCTCTTCAAGAACCAACTCCAGCAATCTCAGGTAGAGCACCAGTTGCGAAGAGAAATTGAAATCCAGAGTCATCTTCGGCATCCCAATATACTCCGATTGTTTGGTTATTTTTATGATCAGAGTCGTGTCTATCTGATTCTTGAATACGCTGCAAAAGGTGAGCTGTACAAAGAGCTTCAACGCTGTAAATGCTTCAACGAAAAGCGGGCGGCCACTTACATTGCATCATTGGCACGAGCCCTGATCTATTGTCATGAAAAACATGTGATACACCGGGACATCAAGCCAGAGAACTTGTTGGTTGGCATACAGGGTGAACTCAAAATTGCAGATTTTGGATGGTCTGTGCACACTTTTGATAGAAGGCGAACCATGTGTGGAACCTTGGATTACTTGCCTCCTGAAATGGTGGAGAACAAGGAGCATGATGCTGGGGTAGACATTTGGAGCTTGGGAGTTTTGTGTTATGAGTTTCTTTATGGGTTTCCTCCTTTTGAAGCTAAGGAGCATTCAGACACTTACAAAAGGATTGTCAAAGTTGATTTGAAATTTCCTCCCAGGCCTTTTGTCTCCGATGCAGCCAAAGACCTTATTCGTCAACTTTTGGTGAAAGACTCTTCACAAAGATTGCCCCTACTTAAAGTTCTTCAACATCCCTGGATTTTTCAAAACGCTGATCCTGATGGCGTTTACAAGACAGGACATTGA___AGAATGTAGTGATTGTTGCTTCATCTCTGGATTGTTCAAACTGCTGATCCTGACGGTATTTACAAGGCACCGCTGCATTGAATAACGTACTGATTGTTCTACATGAAGTTCTCCAACAGATCTGAATTGTTCAAAATGCTCATCCCCATGATAGTGTTTACGAGGCACTGTATTGAATAACGTACTGATTGTTGCATTTATATCTTACAGGAAACAGAAGTGTTATTAAACCATTGAGGTGTAGGCATTAGCTTGCACTAGGTGGATGTTTAATCCCTCGTGTTGTTGAAGAGTGCTTCTAGTGGGTTACCGGGCATTCTGATAATATGTAAAGCCCTTTCTTGTATTTTATTCTTTTCAAATTCATTGAGCGATGTTTTTCCTTCACTGTCCTCCGAACTGGGAGACAGGAGGCTTCGGTGTCTGAATAACACTTAGCAATTTTATTATTCTTTAAAAAAaGCATAACAGGAAGATCTTGCAATTTTAGTAT

Fln Alignment:

sp_v1.1_unigene4434___DGTMAQVPQKNEKEDAKKDERRWTLNDFDIGKPLGRGKFGNVYLAREKKSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLFGYFYDQSRVYLILEYAAKGELYKELQRCKCFNEKRAATYIASLARALIYCHEKHVIHRDIKPENLLVGIQGELKIADFGWSVHTFDRRRTMCGTLDYLPPEMVENKEHDAGVDIWSLGVLCYEFLYGFPPFEAKEHSDTYKRIVKVDLKFPPRPFVSDAAKDLIRQLLVKDSSQRLPLLKVLQHPWIFQNADPDGVYKTGH
A9NX61______________DETTAQIPQKNEKEDAKKDERRWTLNDFDIGKPLGRGKFGNVYLAREKKSKYVVALKVLFKNQLQQSQVEHQLRREIEIQSHLRHPNILRLFGYFYDQSRVYLILEYAAKGELYKELQRCKCFNEKRAATYIASLARALIYCHEKHVIHRDIKPENLLVGIQGELKIADFGWSVHTFDRRRTMCGTLDYLPPEMVENKEHDAGVDIWSLGVLCYEFLYGFPPFEAKEHSDTYKRIVKVDLKFPPRPFVSDAAKDLIRQLLVKDSSQRLPLHKVLQHPWIFQNADPDGVYKALH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
727			87	12	0.992554
937	16		83		0.994512
1062	22	77			0.999999
1064	77		22		0.999999
1065	77		22		0.999999
1279	20		80		1.0
1327		21		78	1.0
1503	50		50		1.0
1522	31	68			1.0
1580		72	27		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain