SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4420

Length: 451 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene4420
TCCCGTTAATTCTCTAGATTCAGTGGAGTGCAGGATACAAAGGGCACATCCAAGAGCTTTCCAAAGCATGACACTAGACATGTTTCAGAGCATAAGAATGTTGCTAGATGTGCAAGATTTAGTCCAGATGGATGTTTCATGGCAACAGGGAGTACTGATACATCAATTAAGCTGTTTGAGGTTGCAAAGGTTAGGCAAATGCTGATGCCAGATGCAAGTGGAAGGGATGGACCTCTCCGGCCTGTTATCCGAACATTTTATGATCACATGCAACCTATCAATGATTTGGATTTCCATCCACGGTCTGCTGTATTAATATCTGGTGCTAAGGATCATACCATAAAGTTTTTTTGATATTGCAAGGACAGGGACAAGGAGAGCTCATCGAGTTATCCAGGATACACACAATGTTCGATCTGTTGCTTTCCACCCTTCTGGAGACTTCATTTTA

Ace file of the UniGene sp_v1.1_unigene4420

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cleavage stimulation factor 50 kDa subunit, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	cleavage stimulation 50 kda expressed	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	76%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	76%
Blast2go	WD40-repeat-containing domain	IPR017986	-	76%
Blast2go	WD40 repeat, subgroup	IPR019781	-	76%
Blast2go	WD40 repeat 2	IPR019782	-	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SIL8

Fln msg: Overlapping hits, possible frame ERROR between 363 and 347, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 193 aas, your sequence is shorter than subject: 151 - 484

Fln protein: SR*FSRFSGVQDTKGTSKSFPKHDTRHVSEHKNVARCARFSPDGCFMATGSTDTSIKLFEVAKVRQMLMPDASGRDGPLRPVIRTFYDHMQPINDLDFHPRSAVLISGAKDHTIKxxxxxxxTGTRRAHRVIQDTHNVRSVAFHPSGDFIL

Protein Length: 152

Fln nts: TCCCGTTAATTCTCTAGATTCAGTGGAGTGCAGGATACAAAGGGCACATCCAAGAGCTTTCCAAAGCATGACACTAGACATGTTTCAGAGCATAAGAATGTTGCTAGATGTGCAAGATTTAGTCCAGATGGATGTTTCATGGCAACAGGGAGTACTGATACATCAATTAAGCTGTTTGAGGTTGCAAAGGTTAGGCAAATGCTGATGCCAGATGCAAGTGGAAGGGATGGACCTCTCCGGCCTGTTATCCGAACATTTTATGATCACATGCAACCTATCAATGATTTGGATTTCCATCCACGGTCTGCTGTATTAATATCTGGTGCTAAGGATCATACCATAAAGxxxxxxxxxxxxxxxxxxxxxACAGGGACAAGGAGAGCTCATCGAGTTATCCAGGATACACACAATGTTCGATCTGTTGCTTTCCACCCTTCTGGAGACTTCATTTTA

Fln Alignment:

sp_v1.1_unigene4420___FSRFSGVQDTKGTSKSFPKHDTRHVSEHKNVARCARFSPDGCFMATGSTDTSIKLFEVAKVRQMLMPDASGRDGPLRPVIRTFYDHMQPINDLDFHPRSAVLISGAKDHTIKxxxxxxTGTRRAHRVIQDTHNVRSVAFHPSGDFIL
D7SIL8______________YDRFA-VHDTKGSSKSFPKHETRHVSEHKNLARCARFSLDGRFVATGSADMSIKLFEISKIKQMMLPDANTRDGPVRPVIRTFYDHIQPINDLDFHPQSTVLISGAKDHTIKxxxxxxTVAKRAFRVIQDTHNVRSVSFHPSGDFLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain