SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4416

Length: 1201 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TRN1; TRN1 (TORNADO 1)	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	67%
Blast2go	meristem structural organization	GO:0009933	Biological Process	67%
Blast2go	auxin polar transport	GO:0009926	Biological Process	67%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	67%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	67%
Blast2go	nuclear import	GO:0051170	Biological Process	67%
Blast2go	radial pattern formation	GO:0009956	Biological Process	67%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABA8

Fln msg: your sequence is longer than subject: 235 - 186

Fln protein: MELHRKLNNLINFSVQLEERKVPHMFYFVRADSGFAKRLVTDIVSGMNALQLHLLCEYRRELHVVDGQLGCSLMKVDNRTVQSILPYLNGLMKMLTFALKVGAHVVAGMGEMIPDLSREVAKLAESSFLYGAGAAAIHDIGETTSRALTVRSRDVNYRSRYVNYRPLDVTQFRAAQQWLVDFLKSQRCLNGKAIAEKFGLWRVRYTDDGQIAWVCHRHKDYGIRINEVIELPID*

Protein Length: 236

Fln nts: TTAGCAAAGACGATATCACGATCTTTACAGGCTTGCTGTTGAGCTGGATGTGCCATCAGCTAACGACATCCCCGATTCTCAAGGTGCTCGGAATGACGATGATGATGAAGAAAATGAAGATGGGTCTGTGTCTCCTACCATTGCTGGGATAGCAAAGGGGGTTGAGAAGGTATTGGAGAGGCTTAAGATCATTGAGAGGGACCTCCAGGACATCAAGCAAGAAATTCAAGGACTGAGGTATTATGAGCACACTCTTCTG_-_ATGGAACTCCACAGAAAATTGAACAATCTGATCAACTTCTCAGTCCAACTGGAAGAGAGAAAAGTCCCACACATGTTTTATTTTGTCAGAGCGGACAGCGGCTTTGCAAAAAGGTTGGTGACAGACATTGTTTCTGGCATGAATGCACTGCAATTACATCTGTTATGTGAATACAGGCGCGAATTACACGTTGTTGATGGCCAACTTGGGTGCAGTCTAATGAAAGTCGACAACAGAACAGTGCAGAGCATTCTTCCATATCTTAACGGGTTAATGAAAATGCTGACCTTTGCCCTGAAAGTGGGTGCCCATGTTGTAGCAGGGATGGGTGAAATGATCCCTGATTTGAGCAGGGAAGTTGCCAAGTTAGCAGAATCTTCGTTTTTATATGGAGCAGGAGCTGCAGCAATCCATGATATTGGGGAGACCACTAGTAGAGCCTTAACAGTTAGATCTCGAGATGTGAATTATAGGTCTCGATATGTGAATTATAGGCCTCTGGATGTGACTCAATTCAGAGCAGCCCAACAGTGGTTGGTGGACTTTTTGAAAAGCCAGAGGTGCCTCAATGGAAAGGCTATTGCAGAGAAGTTTGGATTATGGAGGGTGAGATACACTGATGATGGTCAGATTGCTTGGGTTTGCCATCGACACAAGGACTATGGAATCCGGATCAATGAAGTCATAGAACTCCCTATTGATTAA___AAGCCAAGTTTGCTCAGATGTCTTATGTATTGTGATTCAGGAACTGAAATTGCTTTGCTTCACGTGGCAAAATGCATTGACAATGTAGATGACCGAGTCCTCGAATATTTTTCTGCAATTTTCATGTGGGATTGTTCACTTGTAGCAGGCATACGACAATTTCAACTACTGTAAAGCTTGGTGTTTTCTTATAGCCAGTCAAGAAATTTTCAACAACTGTAAAGCTTGGTCCTGGTA

Fln Alignment:

sp_v1.1_unigene4416___MNALQLHLLCEYRRELHVVDGQLGCSLMKVDNRTVQSILPYLNGLMKMLTFALKVGAHVVAGMGEMIPDLSREVAKLAESSFLYGAGAAAIHDIGE-----TTSRALTVRSRDVNYRSRYVNYRPLDVTQFRAAQQWLVDFLKSQRCLNGKAIAEKFGLWRVRYTDDGQIAWVCHRHKDYGIRINEVIELPID
D5ABA8______________MTALQLHLLCEYRHELHVVDDQPGCNLLKVSNQTVQCILPYLNGLMKMLTFALKVGAHVVAGMGEMIPDLSKEVAQLEESSL----GANIVAGMGEMIPYLSTEVAKLGESPSLSAGAVAIN---SDVNQFRTAQQWLVDFLKSQGCLNGKAIAQKFGLWRVRYTDDGQIAWVCNRHKASGIRNNEVMEIPID

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
280	40		60		1.0
421	25		75		0.996473
423			25	75	0.996473
424	75		25		0.996473
425			25	75	0.996473
448		75		25	0.996473
512		33		66	0.997452
708			85	14	0.993533
710			14	85	0.993533
711	85		14		0.993533
737			14	85	0.993533
749		14		85	0.993533
795	11			88	0.923564
799			11	88	0.923564
863	10		90		0.90298
978	25	75			1.0
990	87		12		0.992554
995			25	75	1.0
1022		18	72		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain