SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4381

Length: 333 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene4381
GCTCTACTTCAGCGGTTGAGAATTTCCTAAGGGAATATGCTTATCAAATGCCAACCAGATATTCACTCTTTAAAGTCAAGAAGATCACAGGCAACTTTGCAGAAAGGTTGGGAGAAGGCGGTTATGGTGTCGTCTATAAAGGAAAGCTTCAGAATGACACTCCGGTGGCTGTTAAGGTTCTTGACAGGCATAGACACAGCGAGGCCCAATTCATGAATGAAGTGGCCACCATTGGATATCTTCACCATGTCAATTTGGTTCGTCTATTCGGGTATTGCTATGAAAGCTTAACAAGTGCCTTGTGTATGAGTACATGCCCATTGGATCTCTCGA

Ace file of the UniGene sp_v1.1_unigene4381

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU	-	-	8.0e-16	41%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	resistance-related receptor-like kinase	-	-	1.40962e-15	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.40962e-15	64%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.40962e-15	64%
Blast2go	Protein kinase-like domain	IPR011009	-	1.40962e-15	64%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	1.40962e-15	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XID3

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 110 - 829

Fln protein: STSAVENFLREYAYQMPTRYSLFKVKKITGNFAERLGEGGYGVVYKGKLQNDTPVAVKVLDRHRHSEAQFMNEVATIGYLHHVNLVRLFGYCYESLTSALCMSTCPLDLS

Protein Length: 111

Fln nts: GCTCTACTTCAGCGGTTGAGAATTTCCTAAGGGAATATGCTTATCAAATGCCAACCAGATATTCACTCTTTAAAGTCAAGAAGATCACAGGCAACTTTGCAGAAAGGTTGGGAGAAGGCGGTTATGGTGTCGTCTATAAAGGAAAGCTTCAGAATGACACTCCGGTGGCTGTTAAGGTTCTTGACAGGCATAGACACAGCGAGGCCCAATTCATGAATGAAGTGGCCACCATTGGATATCTTCACCATGTCAATTTGGTTCGTCTATTCGGGTATTGCTATGAAAGCTTAACAAGTGCCTTGTGTATGAGTACATGCCCATTGGATCTCTCGA

Fln Alignment:

sp_v1.1_unigene4381___LREYAYQMPTRYSLFKVKKITGNFAERXXXXXXXXXXXXXXQNDTPVAVKVLDRHRHSEAQFMNEVATIGYLHHVNLVRLFGYC
Q9XID3______________LLEYASGAPVQFTYKELQRCTKSFKEKLGAGGFGTVYRGVLTNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFC

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
91	14		85		0.993533
106	14		85		0.993533
120	14		85		0.993533
237		16		83	0.994512
269		75	25		0.996473
282		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain