SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4367

Length: 2082 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4367
CGTCGTGACCTTGGCTGTCACTCAATGACGATTCTGCCACGTCCCCAATGACTCTGTTGTCTACCCACTTTTCAGCTTGGCTTCATGGACTTCAAGCCTGTTTAGCTACCGGTGCACTTAAATCCCTGATCAACTTTCACGTTTTCTCTGCAGAGAATGACATGATTTGGACCTGAAAATATCAATTTCAAAGCAATTCCAGAGGGATAACGTGGGATCCTTACCATTACCAACAACCCACCATTCCGCCCTGGCGAGCTCAGGCATCTTTTGATTCTATTTAACCATTAATTCATCTGGGCAGTTGCGATTCTGTACAATTCGATCGCTCCATTTTAGCAGACATGGAGGTGTCTGTATTGATGTGGGTACTGCTATTCTATTCCTTATTTGGTTTTCAAGTGACGACAGCTAGGCTGGACAGGAACAACTTCCCCTCAGATTTCATGTTCGGCACAGCTTCTTCAGCGTATCAGTATGAAGGAGCAGTCCGAGAAGATGGCAAGGGTCCTAGCACATGGGACGCCTTAACACATATGCCTGGTAGAATAAAAGATAGCAGCAATGGAGATGTGGCAGTCGACCAATATCACAGATATATGGAAGATATCGAGCTTATGGCTTCACTTGGACTAGATGCCTATAGATTCTCCATATCCTGGTCTCGAATCCTTCCAGGAGGAAGAGGTGAAATTAACATGGCTGGGATTGAATATTACAATAATCTGATTGACGCTCTTCTGCAAAATGGGATCCAGCCATTCGTGACATTGTTCCATTTCGATCTTCCCAAAGCACTTGAAGACTCCTATGGGGGATGGCTGAGTCCTCAAATAATTAACGACTTCGAAGCCTACGCAGAGATTTGCTTCCGGGCATTCGGCGACCGTGTCAAATATTGGGCGACAGTGAACGAGCCAAATCTGTTTGTGCCGTTGGGATACACCGTCGGAATATTTCCACCGACGAGGTGTACTGCCCCTCACGCCAATTCTTTGTGCATAACAGGGAATTGCTCGTCAGCAGAGCCATATCTAGCTGCACATCACGTTTTGCTCGCCCACGCAGCTGCAGTGGAGAAATATAGGGAGAAATATCAGAAAATTCAACGAGGATCTATAGGGTTAGTTATGAGCGCGCCGTGGTACGAACCCTTGGAAGATTCTCCAGAAGAGAGATCAGCTGTTGACAGAATTTTATCCTTCAATCTCCGATGGTTTTTGGATCCAATTGTTTTTGGAGATTATCCACAAGAAATGCGTGAAAGATTAGGAACGCGCTTACCCTCCATATCCTCCGAACTATCTGCGAAACTTCGGGGATCGTTCGACTATATGGGTATTAATCACTATACAACCTTATACGCAACAAGCACTCCTCCCCTTTCCCCCGACAACACGCAATATCTATATCCAGACTCTAGGGTTTATCTGACTGGAGAGCGCCATGGAGTCTCCATCGGAGAACGGACAGCGATGGATGGTTTGTTTGTGGTACCTCATGGAATTCAGAAAATCGTGGAGTATGTAAAAGAATTCTATGACAACCCGATTATTATTATCACAGAGAACGGCTATCCAGAGTCTGAGGAATCCTCGTCGACTCTGCAAGAAAATCTAAGCGATGTGAGGAGAATAAGGTTTCATGGAGATTGTTTGAGTTATCTTACTGCAGCAATCAAAAATGGCTCAGATGTTCGAGGGTACTTTGTGTGGTCTCTTCTGGATAATTTTGAGTGGGCATTTGGGTATACCATTAGATTTGGTCTTTATCACGTGGATTTCATTTCTGATCAAAAGAGATATCCCAAGCTCTCGGCTCAATGGTTCAGGCAATTTCTTCAGCACGACGATCAGGGAAGTATTAGAGGCAGCAGCAGCATTTAGACTGCGTTGTCTATTTGCTAATCAAAGCGCACACTTTCATGCAACTCTACCCAAAATCCTGCAAGCAAATATGTTGTGGTCGGATCTATCCACCGTGACACACATTACATAGAAATCATCGATCTATTCCAAAATGCAGAAAACCCCATTCAGACGTTTCAGACGTTCGAGGGAATTGCAGAGTACGAACATTGAG

Ace file of the UniGene sp_v1.1_unigene4367

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	94%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	96%
Blast2go	bgl18_orysj ame: full=beta-glucosidase 18 short=os4bglu18 flags: precursor	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	70%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	70%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	70%
Blast2go	Glycoside hydrolase, family 1, active site	IPR018120	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg:

Fln protein: MEVSVLMWVLLFYSLFGFQVTTARLDRNNFPSDFMFGTASSAYQYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPGGRGEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCTAPHANSLCITGNCSSAEPYLAAHHVLLAHAAAVEKYREKYQKIQRGSIGLVMSAPWYEPLEDSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGTRLPSISSELSAKLRGSFDYMGINHYTTLYATSTPPLSPDNTQYLYPDSRVYLTGERHGVSIGERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQGSIRGSSSI*

Protein Length: 515

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGACGATTCTGCCACGTCCCCAATGACTCTGTTGTCTACCCACTTTTCAGCTTGGCTTCATGGACTTCAAGCCTGTTTAGCTACCGGTGCACTTAAATCCCTGATCAACTTTCACGTTTTCTCTGCAGAGAATGACATGATTTGGACCTGAAAATATCAATTTCAAAGCAATTCCAGAGGGATAACGTGGGATCCTTACCATTACCAACAACCCACCATTCCGCCCTGGCGAGCTCAGGCATCTTTTGATTCTATTTAACCATTAATTCATCTGGGCAGTTGCGATTCTGTACAATTCGATCGCTCCATTTTAGCAGAC_-_ATGGAGGTGTCTGTATTGATGTGGGTACTGCTATTCTATTCCTTATTTGGTTTTCAAGTGACGACAGCTAGGCTGGACAGGAACAACTTCCCCTCAGATTTCATGTTCGGCACAGCTTCTTCAGCGTATCAGTATGAAGGAGCAGTCCGAGAAGATGGCAAGGGTCCTAGCACATGGGACGCCTTAACACATATGCCTGGTAGAATAAAAGATAGCAGCAATGGAGATGTGGCAGTCGACCAATATCACAGATATATGGAAGATATCGAGCTTATGGCTTCACTTGGACTAGATGCCTATAGATTCTCCATATCCTGGTCTCGAATCCTTCCAGGAGGAAGAGGTGAAATTAACATGGCTGGGATTGAATATTACAATAATCTGATTGACGCTCTTCTGCAAAATGGGATCCAGCCATTCGTGACATTGTTCCATTTCGATCTTCCCAAAGCACTTGAAGACTCCTATGGGGGATGGCTGAGTCCTCAAATAATTAACGACTTCGAAGCCTACGCAGAGATTTGCTTCCGGGCATTCGGCGACCGTGTCAAATATTGGGCGACAGTGAACGAGCCAAATCTGTTTGTGCCGTTGGGATACACCGTCGGAATATTTCCACCGACGAGGTGTACTGCCCCTCACGCCAATTCTTTGTGCATAACAGGGAATTGCTCGTCAGCAGAGCCATATCTAGCTGCACATCACGTTTTGCTCGCCCACGCAGCTGCAGTGGAGAAATATAGGGAGAAATATCAGAAAATTCAACGAGGATCTATAGGGTTAGTTATGAGCGCGCCGTGGTACGAACCCTTGGAAGATTCTCCAGAAGAGAGATCAGCTGTTGACAGAATTTTATCCTTCAATCTCCGATGGTTTTTGGATCCAATTGTTTTTGGAGATTATCCACAAGAAATGCGTGAAAGATTAGGAACGCGCTTACCCTCCATATCCTCCGAACTATCTGCGAAACTTCGGGGATCGTTCGACTATATGGGTATTAATCACTATACAACCTTATACGCAACAAGCACTCCTCCCCTTTCCCCCGACAACACGCAATATCTATATCCAGACTCTAGGGTTTATCTGACTGGAGAGCGCCATGGAGTCTCCATCGGAGAACGGACAGCGATGGATGGTTTGTTTGTGGTACCTCATGGAATTCAGAAAATCGTGGAGTATGTAAAAGAATTCTATGACAACCCGATTATTATTATCACAGAGAACGGCTATCCAGAGTCTGAGGAATCCTCGTCGACTCTGCAAGAAAATCTAAGCGATGTGAGGAGAATAAGGTTTCATGGAGATTGTTTGAGTTATCTTACTGCAGCAATCAAAAATGGCTCAGATGTTCGAGGGTACTTTGTGTGGTCTCTTCTGGATAATTTTGAGTGGGCATTTGGGTATACCATTAGATTTGGTCTTTATCACGTGGATTTCATTTCTGATCAAAAGAGATATCCCAAGCTCTCGGCTCAATGGTTCAGGCAATTTCTTCAGCACGACGATCAGGGAAGTATTAGAGGCAGCAGCAGCATTTAG___ACTGCGTTGTCTATTTGCTAATCAAAGCGCACACTTTCATGCAACTCTACCCAAAATCCTGCAAGCAAATATGTTGTGGTCGGATCTATCCACCGTGACACACATTACATAGAAATCATCGATCTATTCCAAAATGCAGAAAACCCCATTCAGACGTTTCAGACGTTCGAGGGAATTGCAGAGTACGAACATTGAG

Fln Alignment:

sp_v1.1_unigene4367___MEVSVLMWVLLFYSLFGFQVTTARLDRNNFPSDFMFGTASSAYQYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPGGRGEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCTAPHANSLCITGNCSSAEPYXXXXXXXXXXXXXXEKYREKYQKIQRGSIGLVMSAPWYEPLEDSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGTRLPSISSELSAKLRGSFDYMGINHYTTLYATSTPPLSPDNTQYLYPDSRVYLTGERHGVSIGERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESSSTLQENLSDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQGSIRGSSSI
Q9ZT64______________MEVSVLMWVLLFYSLLGFQVTTARLDRNNFPSDFMFGTASSAYQYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPHANPLCMTGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYATSTPPLSPDHTQYLYPDSRVYLTGERHGVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIIAENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQHDDQGSIRSSSSI

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1146			85	14	0.993533
1148		14	85		0.993533
1150		14		85	0.993533
1152		85		14	0.993533
1161		10	90		0.90298
1162		10	90		0.90298
1167			10	90	0.90298
1170	10			90	0.90298
1172		90	10		0.90298
1325	11		88		0.923564
1332	10	90			0.90298
1362		90		10	0.90298
1519	66		33		1.0
1599		83	16		0.994512
1608		16		83	0.994512
1609		83		16	0.994512
1612		83	16		0.994512
1613	66	16			0.988813
1614	83			16	0.994512
1616	83			16	0.994512
1617	83	16			0.994512
1619	83	16			0.994512
1625	16		83		0.994512
1692		66		33	1.0
1779		75		25	1.0
1846	11	88			0.999952
1880	9		90		1.0
1906		22		77	1.0
1969			81	18	1.0
1976		86		13	0.999973
2003	76		23		1.0
2044	85	14			0.993533
2045	14	71		14	0.984337

SSRs (tot: 1)

Start position	End position	Sequence	Length
1870	1881	GCA GCA GCA GCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain