SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4361

Length: 1515 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4361 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ domain-containing protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	btb poz domain-containing protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	76%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	BTB/POZ-like	IPR000210	-	76%
Blast2go	BTB/POZ fold	IPR011333	-	76%
Blast2go	BTB/POZ	IPR013069	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K0

Fln msg: your sequence is longer than subject: 379 - 326

Fln protein: MATTERKVLPKSIAPYNIHMRSLSIRFATKSLGTTFIVNTNVSIKIETVDVRMSDSKVETTARLAQWKIENLLSCSYRRSDPFKMGLWNWHLSVEKNRYLHVRLFPEPSRSSKDQPPVATFVLRIYNVAVNKRPWTSPVQDRLLRSSEDFVWPVETTFHGRFIIDVEFLDLKVASMNGGELSSIWPNEGDMQSKAIKGALRCLTHMLDDGVHTDVTINTANGSVRAHWAILAARSPVFERMFLQDFKGKESSTIDIEDISFEACMALLSYIYGGIKFEDFRDHRIALLRASEKFVIGDLKEACEDSLLEDINCKNVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRLI*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGCACCACTTATGCTTTCAGGTCTCATAAATTAAAATATTCAGCCCTTGAA_-_ATGGCGACAACAGAAAGAAAAGTCCTTCCGAAATCAATAGCGCCTTACAATATTCATATGAGGTCTCTGTCCATACGGTTTGCAACAAAGTCACTAGGCACTACATTTATTGTAAACACAAATGTATCGATTAAAATCGAAACGGTGGATGTAAGGATGAGCGACTCAAAGGTGGAGACAACCGCACGGCTTGCTCAGTGGAAAATTGAGAACTTGCTTTCATGTTCTTACCGGAGGTCAGACCCATTCAAGATGGGTCTCTGGAATTGGCATCTGTCCGTGGAGAAGAACCGCTATCTACATGTTCGTTTGTTCCCCGAGCCCAGCCGCAGTTCGAAGGACCAGCCACCAGTTGCGACATTTGTGCTTCGTATCTACAACGTGGCTGTGAATAAACGACCTTGGACATCTCCGGTTCAAGATAGGTTGCTCCGGAGCAGTGAGGATTTCGTGTGGCCTGTGGAGACGACTTTTCATGGACGGTTTATCATTGATGTGGAGTTTCTAGATCTAAAAGTTGCTTCAATGAATGGGGGTGAACTTTCTTCAATATGGCCAAATGAAGGAGACATGCAAAGTAAAGCAATCAAGGGTGCTCTGAGGTGCCTTACTCATATGCTGGATGATGGGGTTCATACAGACGTTACAATAAATACTGCCAATGGTAGTGTTAGAGCACATTGGGCAATTTTAGCAGCCAGATCCCCTGTGTTTGAAAGGATGTTCTTGCAAGATTTTAAAGGTAAAGAATCATCAACAATCGACATTGAAGACATCTCTTTTGAAGCTTGCATGGCTCTTTTAAGCTACATATATGGAGGCATCAAGTTTGAGGACTTTCGAGACCACAGGATAGCATTACTCAGGGCTTCTGAGAAATTTGTTATTGGGGACTTGAAAGAAGCATGTGAGGACAGCCTTTTGGAGGATATCAATTGTAAAAATGTTCTTGAAAGGCTTCAACAAGCCTGGCTTTACCAGCTAACCCGGTTGAAGAATGAGTGTTTTAAGTACCTGTTTGATTTTGGAAAGATTCATGACGTGAGAGAAGATCTGAACATATTTTTACAGCATGCCGACAGGAAGTTGACCGTCGAGATGTTTCAAGAAGTTCTAAATGTTTGGAGGTTAATATAA___ACTGTCGACAAACCATCGTCTGTCTTTAAAACCCATAGTTACCAGAGTGTCCATGGATAAAATCACTTTATTTTCAATCTGTCCCATGTAAAGGGCTGCCACTAAACATGCAGAAAGTTGTGTTGATGTCTCAGAGAATTAACTGACATCTTTCATCAACTTAGCAATAGATGAAGAATTCAAATAGAACTATGCTGTTGGATCCATAATGTACTCGTAGTGATTTTCTCTCCAGTTGCTTTTGTATATAGATAAATAAAATTAAATGATCACTTTTCTTTACTTAGTGGACCTACA

Fln Alignment:

sp_v1.1_unigene4361___MSDSKVETTARLAQWKIENLLSCSYRRSDPFKMGLWNWHLSVEKNRYLHVRLFPEPSRSSKDQPPVATFVLRIYNVAVNKRPWTSPVQDRLLRSSEDFVWPVETTFHGRFIIDVEFLDLKVASMNGGELSSIWPNEGDMQSKAIKGALRCLTHMLDDGVHTDVTINTANGSVRAHWAILAARSPVFERMFLQDFKGKESSTIDIEDISFEACMALLSYIYGGIKFEDFRDHRIALLRASEKFVIGDLKEACEDSLLEDINCKNVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRL
A9P2K0______________MTESKVETTARLAQWKIESLGSCSYRRSDPFRVGIWNWHLSIEKNRYLYIRLFPEPGRISKEQPPIATFVLRIFNVGVSRRPWTSPVYDKLLRSSEDFVWPIDSSFHGRFIIDVEFLDLKIATMNGGEACSIWPNEGAMQCQATKGALKCLSRMLDDGLHTDVTINTANGSVRAHRAVLAARSSVFESMFLHDLKEKESSIINIEDISVEACMALLSYIYGGIKHEDFWNHRIALLRAADKYDIGDLKESCEESLLEDIDSKNVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMIQEVLNVWRV

SNPs (tot: 4)

Position	A %	C %	G %	Probability
1433	50	50		1.0
1434		50	50	1.0
1435	50	50		1.0
1436	50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain