SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4359

Length: 1529 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4359

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	syp71 (syntaxin of plants 71) protein transporter	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein targeting to membrane	GO:0006612	Biological Process	0.0	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Target SNARE coiled-coil domain	IPR000727	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC68

Fln msg:

Fln protein: MSVIDILTRVDTICKKYEKYDIETHKNQNISGSDAFARLYSVVEADIEAALAKANDAANEKNRAVAVAINAEIRRTKARLREEVPKLQKLAQKKFKGLSNEELAARSDLVMALAEKIESVPDGMGAGTKQTGGLWTSNTRMEIKLDSSASEDTMRSDFYEHTEESKQFRQEYEMRKAGQDQGLDVIAEGLETLKNMAEDINEELDRQVPIIDEIDTKADLATANLKNTNVRLKETLVKLRSSRNFCIDIILLCIILGIAAYLYNALK*

Protein Length: 269

Fln nts: CGTTAACAGGAAACCCAGTCAGTCGATGCCAACGGCAACCCACTTTCCCGTCGCACCGTTTTGCATTTCTCCACAGCAATTGACAGAATATGCAAAACTTTTGCCACAGAGACCTTTCTTCACCATTCCACGCAAAATTCTCCCTCCTTTCTGCATTCCAGGTCGCGGGTTTGAGTCCAGCAGGGCACT_-_ATGAGCGTCATAGACATTTTAACTCGTGTGGATACCATATGCAAGAAGTACGAGAAATACGACATAGAAACACATAAGAACCAGAACATCTCCGGTAGCGATGCCTTTGCCAGGCTCTACTCTGTTGTCGAAGCCGACATAGAGGCGGCTCTCGCAAAAGCTAACGATGCGGCAAATGAGAAGAACAGGGCGGTGGCCGTGGCTATAAATGCCGAAATCCGGCGGACCAAGGCCAGACTGCGGGAGGAAGTACCGAAATTGCAAAAATTGGCTCAGAAAAAGTTTAAAGGGCTTTCAAATGAAGAACTTGCTGCACGTAGTGATTTGGTCATGGCATTGGCGGAGAAGATTGAGTCAGTACCAGATGGAATGGGAGCTGGGACAAAACAGACAGGAGGCTTGTGGACATCAAATACTCGAATGGAGATTAAGCTTGATTCTTCCGCATCAGAGGATACGATGCGAAGTGACTTCTATGAGCACACTGAAGAATCTAAACAATTCAGGCAAGAGTATGAGATGCGGAAAGCAGGACAGGATCAAGGCCTGGATGTGATTGCCGAGGGACTTGAAACCTTGAAAAATATGGCAGAAGATATAAATGAGGAATTGGACAGGCAGGTTCCCATTATAGATGAAATTGATACAAAAGCGGATCTAGCAACTGCTAACCTGAAGAACACAAATGTTAGGTTGAAAGAGACACTTGTAAAGTTGCGTTCCAGTCGCAATTTTTGTATTGATATTATACTTCTTTGCATAATATTGGGGATTGCAGCATATCTATACAATGCCTTAAAGTAG___GAGCAGAACGCAGTTTTCTTGATACTAGAGAAGACAAAAGCAATCACTTCTTGACAGAGTTTGTATGATCTAAACGTTGTTTCTATACTGCTTGCACTTCTCAGAGAAAATCTAGAACCCTACACTGGAGTTCATATTATCTGTATATATATCAAAGATGTACTGACTTTTCTTTTTTTTTGGTGTACTACCTTGAGTGGTCTTAGTTACCAATAGCATCTCGAGACGGACATAGATAGGCATTACTGTCGCTTTTATGAGATGTAATATTTACTGGTAATCCTAAGGTTTCGATTTGGAGCTGTGTAATTTTTACTTTGTCTTTCACTGAAATCAGAATGATTTGGACTTGTCTTTTGATTGATCAATACTGAATAAATTTTAAAGATGATCTCTGTATAGTCTTCAAACAAATGTTTCAAAGATAATTGCCGAATGATCTCAGATTGGGCCATGAAAAACATGTCTTTGAGTAGGTGAAATCAAGATGCATATGTTTCATCAAGTAACTAGTTACCGGGGCATTACTTTCTAGT

Fln Alignment:

sp_v1.1_unigene4359___MSVIDILTRVDTICKKYEKYDIETHKNQNISGSDAFARLYSVVXXXXXXXXXXXXXXXXXXXXXVAVAINAEIRRTKARLREEVPKLQKLAQKKFKGLSNEELAARSDLVMALAEKIESVPDGMGAGTKQTGGLWTSNTRMEIKLDSSASEDTMRSDFYEHTEESKQFRQEYEMRKAGQDQGLDVIAEGLETLKNMAEDINEELDRQVPIIDEIDTKADLATANLKNTNVRLKETLVKLRSSRNF
D5AC68______________MSVIDILTRVDAICNKYDKYDIEKHRENQISGSDAFVRLYTVVESDIEAAKQKSDDAAKEKNRAVVATLNAEIRRTKARLHEEIPKLQKLAQKKVKGVSKEDIVARNDLVSALADKIDSIPDGTNAGTVRTAAWKTSATRMEIKIDSS-SPGGMNTEFYEHTEESKQFRQDFEMRRAKQDQGLDMISEGLDTLKNMAQDINEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKDTVNKLRSSRNF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
609	12		87		0.992554
801			12	87	0.992554
1004			93	6	0.999364
1088	6		93		0.999364
1244		41		58	1.0
1291		11		88	0.923564
1385	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain