SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4343

Length: 2072 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4343
CTTCTGTAAATCACCTGTATGTATTAAAGTCAAAGCGCAACCCCTGGTAATCTGGGGCCTGTCAAACTTTGCCTCCTAATCTGTGATTTAGAAAAGAAAGGTTGTTAAAGTTATTTGTGTTGTGCCTTGCCTCACTTTTCAGCCTTTATTAATGGAGTGGTAACTCGTTACTTGCCAAGCAGCTTGGAGAGCCGACTAGTTTTAATATAAAAGTCTGTGTGGAATCTTGCAACGAAGGCAGAAGAAGTGCAAGCTTCTTAGATACAGACATGGTTCTATACCCATTTTGACAGTTTATGATCTGTGCTGAATAGTGTTGTGTTCCTTCAGAGACAAAGTTTGGATCTGTAGAGCATCACAACGTGTCTTCAAGATGCATGGTCTTCAATGGCTAGCCATTCTGGTCTTCTTAGTCTCAAAAGTCTTATCGGCTCCAGGAAGTGATATTGTAGATAGGCTGCCCGGACAGCCAGCTGTGACCTTCAAGCAATATGCTGGGTATGTCACAGTGGATGGAAAGAGTGGCCGGGCTCTATTCTATTACTTTGTAGAAGCTGAGACAGACTCAAATTTGAAGCCTTTGGTTGTATGGCTCAATGGAGGGCCTGGGTGTTCTTCATTCGGCGTTGGGGCGCTATCCGAGAATGGTCCATTTCATCCCAGGGGAGGCAAATTGATTACGAATGAGTACAGCTGGAACAAAGAAGCAAACATGCTTTATCTGGAGACTCCCGCTGGAGTTGGATTTTCCTATTCAAACGATACAACATACTATTTGGGTGCAAATGATGCTAAAACAGCGGAGGACAACTTGCTATTTCTCCATGGTTGGTTTGACAAGTTTCCAGAGTACAGGACCAGAGATCTGTATTTAACAGGGGAGAGCTATGCAGGTCACTATATTCCTCAGTGGGCAGAACTTATTGTTGAGGAGAAGATCTTCAATCTGAAGGGTATAGCTATTGGCAACCCACTCCTTGATTTCTACACAGATTTTAACGCAAGGGCGGAGTTCCTATGGTCACATGGCCTTATTTCTGACTCTACATATAATATTATGAAAAACGGCTGCAACTATACTCGCTATGTGGATGAGTATTACCGAGGCAGTGTTTCTTCGACCTGTGAAGACGTCTACTCAATTGTTAGCATGGAGGTCAGCCAATACATTGATAGATACGACGTCACACTAGACATCTGTTTATCGTCTCTTGACACCCAGAAGTCTAAGATGCTGGGAGTTGAGATTGCAGGATCCAGACTGGCAGTACAGCCAGATGTTTGTGTGGAAAATGAAGCTACAGCTTATCTAAATAGGGTGGATGTGCAAAAAGCATTTCATGCTCGCCTTGTTGGAATCATTAAAAGATGGGATTCCTGTAGCAATGTACTTGATTACGATCATCTTAATCTGGAGATCCCAACTGTCCCCTTACTTGGAAAACTCACCATGACTGGCATACGGGTCTTGATTTACAGTGGAGATCAGGACTCTGTCATACCTTTAACGGGGACACGTACACTGATTAACAATCTGGCTGCAACTCTGAAACTAAATAAAACAGTTCCCTATAGTGTCTGGTTTCAGGGAAAACAGGTGGCGGGATGGGTGCAGGTTTATGGCAATATTTTATCATTCGCAACAGTGAGAGGGGCATCTCATGAAGTGCCATTTTCTCAGCCAGAGAGATCTTTAGTGTTATTCAAGGCATTCCTGCAAGGCCAAACTCCTCCCAGTGTCATGATGTGAATAGATAATGTAAAATACAAATAGATGTACTGATCAGGGGTGAACGACTTGCTGTGTTTAGTGTATTCATACTGTGCCTGTATATTAGATATTCACCAGCTTTGAAGCAAGCAACTTTGTGTCACAGGGTCTGCTTTGTGCTGCTTTCTAAATGGTGTGTGAGGAGTTGGTTAGAAGATTTTTGTGCAAATGATATTTCCATGTAAGTCAGGGATTTCTATATATGTTCAAATCAGTCAGGGATTTCTATATATGTTCAAATCAGTCGAGAGTTCTAATTCTCTATTCATTTGATTGGTTAATTTAAATGAATTAATTTACC

Ace file of the UniGene sp_v1.1_unigene4343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase, putative (EC:3.4.16.6); K13289 cathepsin A [EC:3.4.16.5]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Carboxypeptidase C.	EC:3.4.16.5	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	77%
Blast2go	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX41

Fln msg:

Fln protein: MHGLQWLAILVFLVSKVLSAPGSDIVDRLPGQPAVTFKQYAGYVTVDGKSGRALFYYFVEAETDSNLKPLVVWLNGGPGCSSFGVGALSENGPFHPRGGKLITNEYSWNKEANMLYLETPAGVGFSYSNDTTYYLGANDAKTAEDNLLFLHGWFDKFPEYRTRDLYLTGESYAGHYIPQWAELIVEEKIFNLKGIAIGNPLLDFYTDFNARAEFLWSHGLISDSTYNIMKNGCNYTRYVDEYYRGSVSSTCEDVYSIVSMEVSQYIDRYDVTLDICLSSLDTQKSKMLGVEIAGSRLAVQPDVCVENEATAYLNRVDVQKAFHARLVGIIKRWDSCSNVLDYDHLNLEIPTVPLLGKLTMTGIRVLIYSGDQDSVIPLTGTRTLINNLAATLKLNKTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM*

Protein Length: 460

Fln nts: CTTCTGTAAATCACCTGTATGTATTAAAGTCAAAGCGCAACCCCTGGTAATCTGGGGCCTGTCAAACTTTGCCTCCTAATCTGTGATTTAGAAAAGAAAGGTTGTTAAAGTTATTTGTGTTGTGCCTTGCCTCACTTTTCAGCCTTTATTAATGGAGTGGTAACTCGTTACTTGCCAAGCAGCTTGGAGAGCCGACTAGTTTTAATATAAAAGTCTGTGTGGAATCTTGCAACGAAGGCAGAAGAAGTGCAAGCTTCTTAGATACAGACATGGTTCTATACCCATTTTGACAGTTTATGATCTGTGCTGAATAGTGTTGTGTTCCTTCAGAGACAAAGTTTGGATCTGTAGAGCATCACAACGTGTCTTCAAG_-_ATGCATGGTCTTCAATGGCTAGCCATTCTGGTCTTCTTAGTCTCAAAAGTCTTATCGGCTCCAGGAAGTGATATTGTAGATAGGCTGCCCGGACAGCCAGCTGTGACCTTCAAGCAATATGCTGGGTATGTCACAGTGGATGGAAAGAGTGGCCGGGCTCTATTCTATTACTTTGTAGAAGCTGAGACAGACTCAAATTTGAAGCCTTTGGTTGTATGGCTCAATGGAGGGCCTGGGTGTTCTTCATTCGGCGTTGGGGCGCTATCCGAGAATGGTCCATTTCATCCCAGGGGAGGCAAATTGATTACGAATGAGTACAGCTGGAACAAAGAAGCAAACATGCTTTATCTGGAGACTCCCGCTGGAGTTGGATTTTCCTATTCAAACGATACAACATACTATTTGGGTGCAAATGATGCTAAAACAGCGGAGGACAACTTGCTATTTCTCCATGGTTGGTTTGACAAGTTTCCAGAGTACAGGACCAGAGATCTGTATTTAACAGGGGAGAGCTATGCAGGTCACTATATTCCTCAGTGGGCAGAACTTATTGTTGAGGAGAAGATCTTCAATCTGAAGGGTATAGCTATTGGCAACCCACTCCTTGATTTCTACACAGATTTTAACGCAAGGGCGGAGTTCCTATGGTCACATGGCCTTATTTCTGACTCTACATATAATATTATGAAAAACGGCTGCAACTATACTCGCTATGTGGATGAGTATTACCGAGGCAGTGTTTCTTCGACCTGTGAAGACGTCTACTCAATTGTTAGCATGGAGGTCAGCCAATACATTGATAGATACGACGTCACACTAGACATCTGTTTATCGTCTCTTGACACCCAGAAGTCTAAGATGCTGGGAGTTGAGATTGCAGGATCCAGACTGGCAGTACAGCCAGATGTTTGTGTGGAAAATGAAGCTACAGCTTATCTAAATAGGGTGGATGTGCAAAAAGCATTTCATGCTCGCCTTGTTGGAATCATTAAAAGATGGGATTCCTGTAGCAATGTACTTGATTACGATCATCTTAATCTGGAGATCCCAACTGTCCCCTTACTTGGAAAACTCACCATGACTGGCATACGGGTCTTGATTTACAGTGGAGATCAGGACTCTGTCATACCTTTAACGGGGACACGTACACTGATTAACAATCTGGCTGCAACTCTGAAACTAAATAAAACAGTTCCCTATAGTGTCTGGTTTCAGGGAAAACAGGTGGCGGGATGGGTGCAGGTTTATGGCAATATTTTATCATTCGCAACAGTGAGAGGGGCATCTCATGAAGTGCCATTTTCTCAGCCAGAGAGATCTTTAGTGTTATTCAAGGCATTCCTGCAAGGCCAAACTCCTCCCAGTGTCATGATGTGA___ATAGATAATGTAAAATACAAATAGATGTACTGATCAGGGGTGAACGACTTGCTGTGTTTAGTGTATTCATACTGTGCCTGTATATTAGATATTCACCAGCTTTGAAGCAAGCAACTTTGTGTCACAGGGTCTGCTTTGTGCTGCTTTCTAAATGGTGTGTGAGGAGTTGGTTAGAAGATTTTTGTGCAAATGATATTTCCATGTAAGTCAGGGATTTCTATATATGTTCAAATCAGTCAGGGATTTCTATATATGTTCAAATCAGTCGAGAGTTCTAATTCTCTATTCATTTGATTGGTTAATTTAAATGAATTAATTTACC

Fln Alignment:

sp_v1.1_unigene4343___MHGLQWLAILVFLVSKVLSAPGSDIVDRLPGQPAVTFKQYAGYVTVDGKSGRALFYYFVEAETDSNLKPLVVWLNGGPGCSSFGVGALSENGPFHPRGGKLITNEYSWNKEANMLYLETPAGVGFSYSNDTTYYLGANDAKTAEDNLLFLHGWFDKFPEYRTRDLYLTGESYAGHYIPQWAELIVE----EKIFNLKGIAIGNPLLDFYTDFNARAEFLWSHGLISDSTYNIMKNGCNYTRYVDEYYRGSVSSTCEDVYSIVSMEVSQYIDRYDVTLDICLSSLDTQKSKMLGVEIAGSRLAVQPDVCVENEATAYLNRVDVQKAFHARLVGIIKRWDSCSNVLDYDHLNLEIPTVPLLGKLTMTGIRVLIYSGDQDSVIPLTGTRTLINNLAATLKLNKTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPSVMM
A9NX41______________MCGLQWLTILAFLFIKVLSGPESDLVDRLPGQPAVTFKQYAGYVTVDEKSGRALFYYFVEAETDSNLKPLVVWLNGGPGCSSFGVGALSENGPFHPRGGKLFGNEYSWNKEANMLYLETPAGVGFSYSNDTTYYLGANDAKTAEDNLQFLHGWFDKFPEYKTRDLYLTGESYAGHYIPQWAELIVEANRKEKIFNLKGIAIGNPLLDFFTDFNARAEYLWSHGLISDPTYNNMKTGCNYTRYVDEYYRGTVSSTCEDVYSTVSMELSQYIDRYDVTLDICLSSVGTQKSKMLGVKTIGTRLAVQPDVCVENEATAYLNMVDVQKAFHARLVGNVKRWDSCSDVLTYDHHNLEIPTVPLLGKLAMTGIRVLIYSGDQDSVIPLTGTRTLVNNLAASLKLNSTVPYSVWFQGKQVAGWVQVYGNILSFATVRGASHEVPFSQPERSLVLFKAFLQGQTPPTVMM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
173	33			66	0.997452
176		66	33		0.997452
177		66	33		0.997452
234		87		12	0.992554
236	87		12		0.992554
237	87		12		0.992554
449			11	88	0.923564
602	75		25		0.996473
611			20	80	0.995493
672	20	80			0.995493
831		11		88	0.923564
889	87		12		0.992554
1330	88		11		0.923564
1754	16		83		1.0
1845		46	53		1.0
2001	16			83	0.994512
2003	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain