SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4297

Length: 1664 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4297

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribose pyrophosphatase, putative	-	-	61%
FL-Next	sp=Nudix hydrolase 14, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	ADP-glucose pyrophosphohydrolase activity	GO:0080042	Molecular Function	78%
Blast2go	ADP-ribose pyrophosphohydrolase activity	GO:0080041	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NUDIX hydrolase domain	IPR000086	-	0.0	78%
Blast2go	NUDIX hydrolase domain-like	IPR015797	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SZ63

Fln msg: your sequence is longer than subject: 374 - 309

Fln protein: MLSSIPQHSGRKCGALVSFSSSLFLVKELRKKKLFNAANACPSVSCAYQSLSTTFYHGYCFRKSENQIFGTSSAFSVSECQPSQSFRAMAWQEPHSGVLRTDGTSVPALSLTIHNNTVEVAAAPGVTYSELRKAFDSILFKQWINNMKSETGILALDDRCCLKKVLIQSLDMFGERVGFLKFKAEVVDKATGSKLPGIVFARGGAVAILMVLECDGESYVVLTEQARVPVGRTILELPAGMLDDDRGDFVGTAAREVKEETGIHISSGDLVNLTAFLDPSTGNKMFPSPGGSDEEISLLLYKGHVKKEVVEALRGRETGLRSQGELIKLHIVPYKTLWRVTADSKALAAITLYEMAKKEGILPLQNTPELFSS*

Protein Length: 375

Fln nts: ATGGGCTGCTTCTACTAGACTTTAGACTTTATGGGTAATGGAAAATTCGTCGAACTGTTTATTCTACGCTTATTCAGGGGAGAAATTTGTATGTCAGTTATGCTGTGGTCAACCGGTACATTGAAGGGTAGTCCAGGATACTCACTCATCTTGGATGAATGACACGTTATAAATTGAAAA_-_ATGTTGAGCTCCATACCGCAACACTCGGGTAGGAAATGTGGTGCTCTAGTCTCGTTCTCCTCTTCGCTCTTTCTTGTGAAGGAACTCAGAAAGAAAAAGCTTTTCAATGCAGCAAATGCTTGCCCTTCTGTGAGTTGTGCATATCAGAGCTTATCCACCACATTTTATCACGGATATTGTTTCAGGAAGTCAGAAAACCAAATATTTGGTACTTCCTCAGCATTTTCTGTAAGTGAATGCCAGCCATCCCAGTCATTTAGAGCAATGGCCTGGCAAGAACCTCATTCTGGAGTCTTGAGGACTGATGGAACAAGTGTTCCAGCGCTATCTCTTACTATCCATAACAATACAGTAGAGGTGGCAGCAGCTCCTGGAGTAACATATTCTGAATTAAGGAAAGCATTTGATTCTATTCTGTTCAAGCAATGGATAAATAATATGAAAAGTGAGACAGGCATCCTGGCCCTTGATGATAGATGTTGTTTAAAGAAAGTACTGATTCAGAGTTTAGACATGTTTGGAGAGCGTGTTGGATTTTTAAAGTTCAAGGCCGAGGTAGTGGATAAAGCAACAGGATCAAAGCTTCCAGGCATTGTGTTTGCTCGAGGTGGGGCAGTTGCTATCTTGATGGTCTTGGAGTGCGATGGAGAGTCCTATGTAGTGTTAACAGAACAGGCTAGAGTCCCTGTTGGAAGAACTATTCTCGAACTGCCAGCTGGTATGCTGGATGATGATAGAGGAGACTTTGTTGGTACTGCTGCTCGTGAGGTCAAAGAAGAAACTGGCATACACATAAGTTCAGGAGATCTGGTTAACCTGACTGCTTTTCTGGATCCTTCAACAGGGAACAAGATGTTTCCTTCTCCGGGTGGAAGCGATGAAGAGATATCTCTCTTGTTGTATAAGGGTCATGTGAAAAAAGAGGTTGTGGAAGCTTTACGTGGTCGAGAAACAGGCCTTCGTAGTCAAGGTGAATTGATTAAGCTGCATATAGTACCATATAAAACACTTTGGCGTGTAACTGCGGACTCCAAGGCCCTTGCTGCAATTACATTATATGAAATGGCCAAGAAAGAGGGTATTTTGCCTCTGCAGAATACACCCGAATTATTCAGTTCATAA___TCATGGGTTGGTCTAAATAATCCATTTGTAAATCTACCGCTCTAGTGTAATTTGTGATATCGTTTTCGTTAGCAAATTGTTGATCGAGTATATGGATCGTTACAATGACATATTTGATGGAGGTTAAAGGTAAGGTTTAATAATAATTGATCTCTAACCATGCAATGCTGAAAATGCATTTGAAAAAGAAACATCATGATACTTCAGAAACAATAGTAGTTTTACCATTCATAATTTCTCATTGTTACTGCAATTTGCAAATTAACACCAATTCATCAAGACCCTATAAGTGCAGTGAGAAAGCAGATGATGGACACCAAAGACTATAAAAACTTATTGTCTTAATAGTTGTCTTATGGTCG

Fln Alignment:

sp_v1.1_unigene4297___NNTVEVAAAPGVTYSELRKAFDSILFKQWINNMKSETGILALDDRCCLKKVLIQSLDMFGERVGFLKFKAEVVDKATGSKLPGIVFARGGAVAILMVLECDGESYVVLTEQARVPVGRTILELPAGMLDDDRGDFVGTAAREVKEETGIHISSGDLVNLTAFLDPSTGNKMFPSPGGSDEEISLLLYKGHVKKEVVEALRGRETGLRSQGELIKLHIVPYKTLWRVTADSKALAAITLYEMAKKEGILPLQ
Q9SZ63______________NEPVLVSATAGISSSDFRDAIDSSLFRNWLRNLESESGILA-DGSMTLKQVLIQGVDMFGKRIGFLKFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAGMLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFLYRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREGLVSSQ

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
197	33		66		1.0
198		33	66		1.0
199		33	66		1.0
289	66		33		0.997452
406	20			80	0.995493
504	36		63		1.0
547		90		10	0.90298
609	11			88	0.923564
617			12	87	0.992554
618	87	12			0.992554
619	87			12	0.992554
621	87	12			0.992554
622		12		87	0.992554
623	12		87		0.992554
624	87		12		0.992554
625	87		12		0.992554
626	87	12			0.992554
628			87	12	0.992554
644			83	16	0.994512
781	25			75	0.996473
784		75	25		0.996473
785			25	75	0.996473
903	90		10		0.90298
905		10	90		0.90298
908		10	90		0.90298
909	10		90		0.90298
990		90	10		0.90298
991			10	90	0.90298
1152	50	50			1.0
1170	33		66		1.0
1250		83	16		0.994512
1358		11		88	0.923564
1361		11	88		0.923564
1362	88		11		0.923564
1364	88		11		0.923564
1365	11			88	0.923564
1366		77		22	0.999999
1367		11	88		0.923564
1370			11	88	0.923564
1371			11	88	0.923564
1375		11		88	0.923564
1377		11	88		0.923564
1378		88		11	0.923564
1379	88	11			0.923564
1394		33		66	1.0
1406			10	90	0.90298
1409	90	10			0.90298
1410	90			10	0.90298
1413	90		10		0.90298
1414		60		40	1.0
1415	90			10	0.90298
1433	50	50			1.0
1486		10		90	0.90298
1487			90	10	0.90298
1489	88		11		0.923564
1501	50		50		1.0
1593	75			25	0.996473
1595	25		75		0.996473
1596	25			75	0.996473
1599	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain