SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4292

Length: 1384 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4292

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF810 domain containing protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF810	IPR008528	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX86

Fln msg: Distance to subject end: 203 aas, your sequence is shorter than subject: 461 - 687

Fln protein: CPFGVLGSQLSEDDLRETAYEIFIAACRPSAGRSSLTYIPQSDKVERPEKSSPSSSASSLSPSLQKSLTSTAASRVKRALGLRSSKKSSHLKDGSPSRSRRPQTIGELLRLQMNVSEQTDARVRRALLRISAGQLGKRVESIVLPLELLQQFKSSDFSDAQEYQVWQRRNLLILEAGLLLHPAVPLERSDAAAQRLRQIVRGAEEKPIETGRNSEAMQALRSAVMSLAWRSTDGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETAVIDEIDELMEMMKKTWALLGINQMLHNICFTWVIFQQFLMTGQIDTDLLGAAENQLVEVAKDAKTVKDPLYVKVLSSTLSAIQGWAEKRLLAYHETFQSTSIGFMESVISVAVAAAKVLVDDISHEYRRKRKEEVDVARNRIDMYIRSSLRTAFAQMMEQVDSRRRSFKKQQNPPPALTVLANDIGDLARNEK

Protein Length: 462

Fln nts: TGCCCATTTGGGGTATTGGGTAGCCAGCTCTCGGAGGACGATTTGAGGGAGACAGCCTATGAGATCTTCATTGCAGCCTGCAGACCCTCAGCTGGAAGATCTTCTCTCACATACATACCTCAATCAGACAAGGTTGAGAGGCCTGAGAAGTCATCACCTTCATCGTCGGCATCATCACTATCACCTTCTCTTCAGAAGTCATTAACCTCTACTGCTGCCAGTAGGGTCAAGAGAGCCCTTGGCTTGAGATCCTCAAAGAAGAGCAGTCACTTGAAGGATGGCAGCCCTTCCAGATCGAGAAGACCCCAGACAATTGGAGAGCTTTTGAGATTGCAGATGAATGTATCCGAGCAGACCGATGCCCGTGTTCGCAGAGCTCTATTAAGAATTTCAGCTGGACAGCTTGGGAAGCGTGTGGAATCGATAGTGCTCCCACTGGAGTTGTTGCAGCAATTCAAGTCCTCTGATTTCTCAGATGCCCAGGAATATCAAGTGTGGCAGAGGAGAAATTTATTGATACTAGAGGCTGGTCTCCTGTTACATCCTGCTGTTCCGCTTGAAAGATCTGATGCTGCTGCTCAACGACTTCGGCAGATTGTACGAGGAGCTGAGGAGAAACCTATTGAAACAGGAAGGAACTCTGAGGCAATGCAAGCATTGCGTAGTGCAGTTATGAGCCTTGCTTGGAGATCAACCGATGGATCCACACCAGAGACCTGTCATTGGGCAGATGGGTTTCCACTAAATCTGTGGCTATATCAAATGCTTCTTAGAGCCTGCTTTGATAGTGGAGAAGAAACAGCTGTTATTGATGAAATTGATGAATTGATGGAGATGATGAAGAAAACCTGGGCTTTGTTGGGCATTAATCAAATGCTTCACAACATTTGCTTCACATGGGTTATATTCCAACAATTTTTGATGACAGGGCAAATTGATACTGATCTGCTTGGAGCAGCAGAAAACCAATTGGTTGAGGTTGCCAAGGATGCCAAGACAGTCAAGGATCCGTTGTATGTCAAGGTACTAAGTTCTACTCTGAGTGCAATTCAAGGCTGGGCAGAAAAGAGGCTTCTTGCTTATCATGAGACTTTTCAGTCCACTAGTATTGGATTTATGGAGAGTGTTATTTCTGTAGCAGTCGCAGCTGCAAAAGTTTTGGTTGACGACATTTCACACGAGTATAGACGCAAGAGAAAAGAAGAAGTGGATGTAGCTCGAAACAGGATTGATATGTATATTCGTTCCTCACTGCGCACTGCTTTTGCACAGATGATGGAACAAGTGGATTCAAGGAGGAGATCATTCAAAAAGCAGCAAAACCCTCCTCCTGCTCTAACAGTACTAGCAAACGACATTGGTGATCTTGCAAGAAATGAAAAGG

Fln Alignment:

sp_v1.1_unigene4292___CPFGVLGSQLSEDDLRETAYEIFIAACRPSAGRSSLTYIPQSDKVERPEXXXXXXXXXXXXXXXXXXXXXXAASRVKRALGLRSSKKSSHLKDGSPSRSRRPQTIGELLRLQMNVSEQTDARVRRALLRISAGQLGKRVESIVLPLELLQQFKSSDFSDAQEYQVWQRRNLLILEAGLLLHPAVPLERSDAAAQRLRQIVRGAEEKPIETGRNSEAMQALRSAVMSLAWRSTDGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETAVIDEIDELMEMMKKTWALLGINQMLHNICFTWVIFQQFLMTGQIDTDLLGAAENQLVEVAKDAKTVKDPLYVKVLSSTLSAIQGWAEKRLLAYHETFQSTSIGFMESVISXXXXXXXXXXDDISHEYRRKRKEEVDVARNRIDMYIRSSLRTAFAQMMEQVDSRRRSFKKQQNPPPALTVLANDIGDLARNEK
A9NX86______________CPFGVLGSQLSEDDLRETAYEIFIAACRPSAGRSTLTYISQSDKAERPEKSSPSSSSSSVSPSLQKSLTSTAASRVKRALGLRSSKKSSHSKDSSHSRSKKPQTIGELLRLQMNVSEQTDARVRRALLRISAGQLGKRVESIVLPLELLQQFKSSDFSDAQEYQVWQRRNLWILEAGLLLHPAVPLERSDAAAQRLRQIVRGAEEKPIETGRNSEAMQALRSAVMSLAWRSTDGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETVVIDEIDELMELMKKTWALLGINQMLHNICLTWVLFQQFLMTGQIETDLLGAAENQLDEVAKDAKAVKDPLYVKVLSSTLSAIQGWAEKRLLAYHETFQCSSVGFMESVLSVALAAAKVLVDDISHEYRRKRKEEVDVARNRIDMYIRSSLRTAFAQMMEQVDSRRRSFKKQQNPPPALTILAKDIGDLARNEK

SNPs (tot: 3)

Position	A %	G %	Probability
1045	12	87	0.992554
1360	25	75	0.996473
1363	25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain