SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4285

Length: 1059 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4285

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3317 domain containing protein	-	-	5.0e-14	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	uncharacterized protein	-	-	5.24086e-42	81%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
79		66	33		0.997452
80		66	33		0.997452
146	16		83		0.994512
147		66	16	16	0.988813
148		66	33		1.0
149	83		16		0.994512
150		83	16		0.994512
151			16	83	0.994512
241		20		80	0.995493
330	80			20	0.995493
332		20	80		0.995493
465	14		85		0.993533
606	80	20			0.995493
610	80			20	0.995493
611			20	80	0.995493
615		20		80	0.995493
616		80		20	0.995493
617			20	80	0.995493
618			20	80	0.995493
620	80			20	0.995493
621	80		20		0.995493
626	87	12			0.992554
628	87	12			0.992554
847		90		10	0.90298
980			85	14	0.999981
1011		11		88	0.923564
1054		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain