SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4284

Length: 744 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4284

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif (RRM)-containing protein	-	-	1.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	rna recognition motif-containing protein	-	-	1.62123e-29	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	1.62123e-29	67%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	1.62123e-29	67%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
99	50			50	1.0
101		50	50		1.0
102		50	50		1.0
103			50	50	1.0
104		50	50		1.0
147		25		75	0.996473
243	12		87		0.992554
244			12	87	0.992554
245	75		25		1.0
246			25	75	1.0
247		75	25		1.0
248			12	87	0.992554
249		12	87		0.992554
250		87		12	0.992554
337	83		16		0.994512
338		83	16		0.994512
339			16	83	0.994512
378	75			25	0.996473
379	75			25	0.996473
380	75		25		0.996473
381			25	75	0.996473
387	80			20	0.995493
388			80	20	0.995493
390			80	20	0.995493
392	80			20	0.995493
393	80		20		0.995493
395	80		20		0.995493
433	11		88		0.923564
434		88		11	0.923564
435	88		11		0.923564
436	88		11		0.923564
437	88		11		0.923564
479	90		10		0.90298
499	90		10		0.90298
501	10	90			0.90298
502		10		90	0.90298
568		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain