SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4247

Length: 1953 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4247
ATGGGGGAGAATTAGAGGTTTGAGCTCTCTTTGATGTCGCCAAAAGCAAGCGTGGTAAAGTTCAGAACCGGCAACATGGCATAACATGATTCGTTAAATGCCCAAATCCCACTTCAATGGGTCCGTTCCAATCACAGAGTGATCGAGAATTCAGAAAGCAAGTCGTTCAATTGTGTTCTCCGCGCATTTCATTCTTCAATTCTTATTATTGGGATCAAAAAGTGTTTGAGGATGGGGTCGTTTGAAAGAGATCTGCACGTGAAATCCCTTCTTTCAATGCTGGAGAAGGTGCCATCTGAGTACCAGGGACAGGACAGTCATCGTCTCACTCTCGCATACTTCGTTGTTTCGGTCCTTGGACATCCTCAATGCTCTCGATCAGGTTGATGCAAAACAGATTATGGATTGGGTCTATCACCTTCAAGTCCTTCCATCAGATGAGGCTGAAGATAGACATGGATATTTTTACGGCTTCCAAGGATCATCTTCAGTCCACTTGTCAAAACATGCTGGAGTTAACTTTAACAATGGTGGTATTGGTCACCTAGCTAGCACTTACTCTGCTTTAGCATTATTAAAGATACTGGGTGATGACTTCACCCGAATTGATTGCAAAGGAATATCAAGAACATTGAAAAATCTTCAACAGCCTGATGGAAGTTTTACTTCTTTGCATACTGGTGCTGAGACAGACCTTCGCTTTGTCTTCTGTGCTGCGGCAATCTGTTTCATGCTGAATGACTGGAGTGGGATGAATGTGGATAAAGCTTTGAGCTATATTATGGATTGTCAGTCATATGATGCTGGTTTTGGGTTGACCCCTGGTGCAGAGTCTCATGGTGGTGCTACTTACTGTGCAATTGCTACGCTTAAGCTGATGGGCTATATTACAGATGATCCTGTTTCAAAAAGGCCATCATGTTCTGTGATTGATTTTCCATCACTGGTGGAGTGGAGTTTATGGAAGCAAAGGATGGATGGAGGCTTTCAAGGTAGATCCAATAAGGACAGTGATACATGCTACTCTTTTTGGGTGGGTGGTTCACTGAAACTCATGGGATTCCATGATTTTTATGACTTGGATGCTCTGCGTTGCTTTTTGTTGTCATGCCAGTCTAAGAATGGCGGCTTCAGTAAAGAGCCCGGGGAGTTTCCAGATTTATATCATGACTATTATGGACTTTGTGGGTTTAGTCTACTAGAGGAGCCTGGATTAAATCCACTTTGTTGTGAGTTAGGTATTTCTGAGCAAGCTAAAAGACGATCTTCATGTGCAGAAGATCTTTGCCTATGAATCTAACGTATGGCAAAATGCAGAATGATGGCACCTTCTTGCATATTTCCACAGCCTTCCAATCCTGGTTTATTTTGGTTTGTGAATAACCTGTTGCTCTGTACTTATAGAAGTCTGAGAAATGATTTCCTCTCCAACCTTGAGAAATTGGCTTATGTATGGATTTTTGATATTCTGTGTTGCAAGGATAGCTGAAACAAGCCTCTGGTCAATTCAACTGCCAAGGCGAGGAGGTGTTTGATTTTACTTTAGAATGGACAATCTTATCCATTCTTGTTCTTCAATACTCGGGAGCTTTAAATTGGGAATGTCCAAGTTATGGCATGCTAAAACTTCTTGTTGTCAAGTCCCAGGGAGTCATTTGCTGAGTTCTATGAAGTTGAAAATGAGCAGTGATTGTTTGGAGTGGAAGAGTTTTATTAATAATCAGAGTAGAATTGTTTTCTGAAATGTAGTTTCTATCTCATGACTACCTAGGTTTCTGATTTTATATGGTTGCTTGATGCATGCTTATTTTTGTGGTCATTTCCATCGTGTTCAGGGGTGTTAGTAGAAAACATGGAAGGTGAATTTTTTTCAGGATCAAATTCAAAATGAGAGGTATCATTGTTTGAAGCAAGCAAAAATGAGATTCCATACGTACATTTTCTCTTGGATGG

Ace file of the UniGene sp_v1.1_unigene4247

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	geranylgeranyl transferase type I beta subunit, putative (EC:2.5.1.60); K11713 geranylgeranyl transferase type-1 subunit beta [EC:2.5.1.59]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	geranylgeranyl transferase type-1 subunit beta	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	0.0	65%

Source	ECs	Term	Type	e value	Identity
AutoFact	Protein geranylgeranyltransferase type I.	EC:2.5.1.59	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	65%
Blast2go	response to protein stimulus	GO:0051789	Biological Process	65%
Blast2go	response to water deprivation	GO:0009414	Biological Process	65%
Blast2go	negative regulation of nitric-oxide synthase 2 biosynthetic process	GO:0051774	Biological Process	65%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	65%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	65%
Blast2go	response to cytokine stimulus	GO:0034097	Biological Process	65%
Blast2go	positive regulation of cell proliferation	GO:0008284	Biological Process	65%
Blast2go		GO:0018348	Biological Process	65%
Blast2go	CAAX-protein geranylgeranyltransferase activity	GO:0004662	Molecular Function	65%
Blast2go	drug binding	GO:0008144	Molecular Function	65%
Blast2go	peptide binding	GO:0042277	Molecular Function	65%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	65%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	65%
Blast2go	isoprenoid binding	GO:0019840	Molecular Function	65%
Blast2go	CAAX-protein geranylgeranyltransferase complex	GO:0005953	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prenyltransferase/squalene oxidase	IPR001330	-	0.0	65%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVH2

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: NPFFQCWRRCHLSTRDRTVIVSLSHTSLFRSLDILNALDQVDAKQIMDWVYHLQVLPSDEAEDRHGYFYGFQGSSSVHLSKHAGVNFNNGGIGHLASTYSALALLKILGDDFTRIDCKGISRTLKNLQQPDGSFTSLHTGAETDLRFVFCAAAICFMLNDWSGMNVDKALSYIMDCQSYDAGFGLTPGAESHGGATYCAIATLKLMGYITDDPVSKRPSCSVIDFPSLVEWSLWKQRMDGGFQGRSNKDSDTCYSFWVGGSLKLMGFHDFYDLDALRCFLLSCQSKNGGFSKEPGEFPDLYHDYYGLCGFSLLEEPGLNPLCCELGISEQAKRRSSCAEDLCL*

Protein Length: 345

Fln nts: ATGGGGGAGAATTAGAGGTTTGAGCTCTCTTTGATGTCGCCAAAAGCAAGCGTGGTAAAGTTCAGAACCGGCAACATGGCATAACATGATTCGTTAAATGCCCAAATCCCACTTCAATGGGTCCGTTCCAATCACAGAGTGATCGAGAATTCAGAAAGCAAGTCGTTCAATTGTGTTCTCCGCGCATTTCATTCTTCAATTCTTATTATTGGGATCAAAAAGTGTTTGAGGATGGGGTCGTTTGAAAGAGATCTGCACGTGAAATCCCTTCTTTCAATGCTGGAGAAGGTGCCATCTGAGTACCAGGGACAGGACAGTCATCGTCTCACTCTCGCATACTTCGTTGTTTCGGTCCTTGGACATCCTCAATGCTCTCGATCAGGTTGATGCAAAACAGATTATGGATTGGGTCTATCACCTTCAAGTCCTTCCATCAGATGAGGCTGAAGATAGACATGGATATTTTTACGGCTTCCAAGGATCATCTTCAGTCCACTTGTCAAAACATGCTGGAGTTAACTTTAACAATGGTGGTATTGGTCACCTAGCTAGCACTTACTCTGCTTTAGCATTATTAAAGATACTGGGTGATGACTTCACCCGAATTGATTGCAAAGGAATATCAAGAACATTGAAAAATCTTCAACAGCCTGATGGAAGTTTTACTTCTTTGCATACTGGTGCTGAGACAGACCTTCGCTTTGTCTTCTGTGCTGCGGCAATCTGTTTCATGCTGAATGACTGGAGTGGGATGAATGTGGATAAAGCTTTGAGCTATATTATGGATTGTCAGTCATATGATGCTGGTTTTGGGTTGACCCCTGGTGCAGAGTCTCATGGTGGTGCTACTTACTGTGCAATTGCTACGCTTAAGCTGATGGGCTATATTACAGATGATCCTGTTTCAAAAAGGCCATCATGTTCTGTGATTGATTTTCCATCACTGGTGGAGTGGAGTTTATGGAAGCAAAGGATGGATGGAGGCTTTCAAGGTAGATCCAATAAGGACAGTGATACATGCTACTCTTTTTGGGTGGGTGGTTCACTGAAACTCATGGGATTCCATGATTTTTATGACTTGGATGCTCTGCGTTGCTTTTTGTTGTCATGCCAGTCTAAGAATGGCGGCTTCAGTAAAGAGCCCGGGGAGTTTCCAGATTTATATCATGACTATTATGGACTTTGTGGGTTTAGTCTACTAGAGGAGCCTGGATTAAATCCACTTTGTTGTGAGTTAGGTATTTCTGAGCAAGCTAAAAGACGATCTTCATGTGCAGAAGATCTTTGCCTATGA___ATCTAACGTATGGCAAAATGCAGAATGATGGCACCTTCTTGCATATTTCCACAGCCTTCCAATCCTGGTTTATTTTGGTTTGTGAATAACCTGTTGCTCTGTACTTATAGAAGTCTGAGAAATGATTTCCTCTCCAACCTTGAGAAATTGGCTTATGTATGGATTTTTGATATTCTGTGTTGCAAGGATAGCTGAAACAAGCCTCTGGTCAATTCAACTGCCAAGGCGAGGAGGTGTTTGATTTTACTTTAGAATGGACAATCTTATCCATTCTTGTTCTTCAATACTCGGGAGCTTTAAATTGGGAATGTCCAAGTTATGGCATGCTAAAACTTCTTGTTGTCAAGTCCCAGGGAGTCATTTGCTGAGTTCTATGAAGTTGAAAATGAGCAGTGATTGTTTGGAGTGGAAGAGTTTTATTAATAATCAGAGTAGAATTGTTTTCTGAAATGTAGTTTCTATCTCATGACTACCTAGGTTTCTGATTTTATATGGTTGCTTGATGCATGCTTATTTTTGTGGTCATTTCCATCGTGTTCAGGGGTGTTAGTAGAAAACATGGAAGGTGAATTTTTTTCAGGATCAAATTCAAAATGAGAGGTATCATTGTTTGAAGCAAGCAAAAATGAGATTCCATACGTACATTTTCTCTTGGATGG

Fln Alignment:

sp_v1.1_unigene4247___SLDILNALDQVDAKQIMDWVYHLQVLPSDEAEDRHGYFYGFQGSSSVHLSKHAGVNFNNGGIGH---LASTYSALALLKILGDDFTRIDCKGISRTLKNLQQPDGSFTSLHTGAETDLRFVFCAAAICFMLNDWSGMNVDKALSYIMDCQSYDAGFGLTPGAESHGGATYCAIATLKLMGYITDDPVSKRPSCSVIDFPSLVEWSLWKQRMDGGFQGRSNKDSDTCYSFWVGGSLKLMGFHDFYDLDALRCFLLSCQSK-NGGFSKEPGEFPDLYHDYYGLCGFSLLEEPGLNPL
A9NVH2______________ALDLMGKLDAVDREEVVSWVLQCQ-------HDRGGF---------------------SGNIGHDPHILYTLSAVQILALL-DKLDAIDADKISAYIEGLQQEDGSFAGDEWG-EIDTRFSYCAVCCLSILRRLDKIDVGKAISYVASCKNFDGGFGCTPGGESHSGQIFCCVSALAISGALTH-----------VDRDLLGWWLCERQVKSGGLNGRPEKLADVCYSWWVLSSLTIIDRVHWIDKEKLKTFILDCQDKEHGGISDRPDDAVDVFHTFFGIAGLSLLEYPGLKPL

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
136	66		33		0.997452
137			66	33	0.997452
138	66	33			0.997452
143		33		66	0.997452
145			66	33	0.997452
146	66			33	0.997452
148	66		33		0.997452
149	66	33			0.997452
157		33	66		0.997452
187	33		66		0.997452
197		66		33	0.997452
247	33		66		0.997452
328		40	60		1.0
372	85		14		0.993533
399	75		25		0.996473
439	83			16	0.994512
441	83			16	0.994512
443			83	16	0.994512
445		20	80		0.995493
966		14		85	0.993533
1049	85		14		0.993533
1050		85		14	0.993533
1051		14		85	0.993533
1053	85			14	0.993533
1054	85		14		0.993533
1059	85			14	0.993533
1063		14	85		0.993533
1064	85			14	0.993533
1065			14	85	0.993533
1068	14	85			0.993533
1069	85	14			0.993533
1071		14	85		0.993533
1073	14			28	1.0
1078	14			85	0.993533
1079	85			14	0.993533
1359	14	85			0.999981
1367		10	90		0.90298
1368	12		12	75	0.975346
1369		25	12		1.0
1370	12			87	0.992554
1372		12		87	0.992554
1373		12		87	0.992554
1374	87	12			0.992554
1375	14			85	0.993533
1376	14			85	0.993533
1706		16	83		1.0
1708	76		17		1.0
1751	88		11		0.923564
1839			83	16	0.994512
1840		16		83	0.994512
1841			16	83	0.994512
1846	20		80		0.995493
1850	25			75	0.996473
1851		25		75	0.996473
1854			25	75	0.996473
1855	75	25			0.996473
1856		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain