SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4244

Length: 1120 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4244

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC119; NAC domain protein, IPR003441	-	-	7.0e-22	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	nac domain ipr003441	-	-	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI0

Fln msg: your sequence is shorter than subject: 238 - 395

Fln protein: MVLYTTPAKGSKSVRTDWVMHQYHLGTEEDEKEDEFVVSKIQLKQCDKNDPGIPEEEDAGTSNSKGDPSTPTTSTPPQPCSKKQHPCLDRIEEEHMFRASSPQAEDLDPKFHLPSKPIEAECDGQIYIPDVTSWLAGESQCFEDSQEQMVGHFSCEEILGNGSCQENADRRDQSIPGLSDCGRIGGNEHEKEMHQTSYSDLANLDFDTPPDGPIPLDSQFSSQESLLGWLKNFGNSQ*

Protein Length: 239

Fln nts: AATGGTCCTCTATACGACTCCTGCAAAAGGATCAAAATCAGTGAGAACAGATTGGGTGATGCACCAATACCATCTTGGGACTGAGGAGGATGAAAAAGAAGACGAGTTTGTTGTGTCAAAAATACAATTAAAGCAATGTGATAAAAATGATCCAGGCATACCTGAAGAGGAGGATGCTGGGACTTCAAACAGCAAAGGTGATCCATCAACACCTACAACAAGTACTCCTCCCCAACCATGTTCAAAGAAGCAACATCCTTGTCTTGATCGAATTGAGGAAGAACATATGTTTCGTGCATCATCACCTCAGGCTGAAGATCTTGATCCAAAATTTCATTTGCCTTCCAAACCTATTGAAGCAGAATGTGATGGACAGATCTATATTCCAGACGTGACTTCATGGTTGGCAGGGGAATCTCAGTGTTTTGAAGATTCACAGGAGCAGATGGTTGGCCATTTTTCTTGTGAGGAGATACTTGGAAACGGATCTTGTCAGGAGAATGCTGACCGTCGCGACCAGTCTATCCCTGGTTTGTCTGATTGTGGTCGGATTGGAGGGAATGAACATGAAAAGGAAATGCATCAAACTTCATATTCTGATCTAGCAAACTTAGATTTTGATACGCCACCTGATGGGCCCATTCCATTAGATTCACAGTTCAGTTCCCAAGAAAGCCTTTTAGGATGGTTAAAGAACTTTGGTAACAGCCAATGA___AGTATATGATGAACTTTTTCATGCATGTAAAGGTCATGCTCGGAGGTTATTTTGTTTTGAAAGGAGTTGAATATCCATCTACAGATTTACTGTTTCGATTTACATCTGGAATCAATAAACCGTTAAAAAGATTTTTCACACCCTATTGATATTCATTTTTATCTCTAGTATATCAGCACTATTTATGGAGGAACAGAAAAATGGACTGATATAGTATGGTCACATGTGTGCCAGCATTTGCTTAATTATAATTTATCATTTATATTCCCAAAATGACAGTCTGCAACTTGGTAAAACACCGAAGTTGGGCCAATGAACTAATTAGTCTGGTGAATTGGGGTTTCTCAACTATTTTTGCCGTCTTCGGAAGCAATTAGCAATCTATTGATTTTCATATTTATCTCT

Fln Alignment:

sp_v1.1_unigene4244___MVLYTTPAKGSKSVRTDWVMHQYHLGTEEDEKEDEFVVSKIQLKQCDKNDPGIPEEEDAGTSNSKGDXXXXXXXXXXQPCSKKQHPCLDRIEEEHMFRASSPQAEDLDPKFHLPSKPIEAECDGQIYIPDVTSWLAGESQCFEDSQEQMVGHFSCEEILGNGSCQENADRRDQSIPGLSDCGRIGGNEHEKEMHQTSYSDLANLDFDTPPDGPIPLDSQFSSQESLLGWLKNFGNSQ
B8LLI0______________MGLEMTSAKGSKPEKTNWVMHQYHLGTEDDEKEGEFVVSKIKYK----TDSGIPQE-DAGTSNGKGDPPTPTTSTPPQPPPEKQYTCFDRIEEEHLFCASSPQAADLDATIHRPSKPNETECDGQTYLPDATSLWVGESQYFEDSQEQMVGLFSCQEILENQSCQENAEGTN-NIPGLSDCGRIGGNTLGKEMHQSSYCDLENIDFDTPPDGPILDYSQFGSQESLSGWLNNFGDSQ

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
501	60	40			1.0
502	60		40		1.0
504		40	60		1.0
505		60	40		1.0
510	40	60			1.0
511			60	40	1.0
512	40			60	1.0
513	40	20	40		1.0
514	40		60		1.0
516			60	40	1.0
517	60		40		1.0
518	60			40	1.0
522		40	20		1.0
523	40			60	1.0
566		12	87		0.992554
567	87		12		0.992554
568	87			12	0.992554
570	85		14		0.993533
574	83	16			0.994512
575	83			16	0.994512
576	83			16	0.994512
579	83	16			0.994512
580	83			16	0.994512
581	83		16		0.994512
588	83			16	0.994512
589	83	16			0.994512
740		10		90	0.90298
750	90		10		0.90298
754	10		90		0.90298
759		10	90		0.90298
760	10	90			0.90298
1082			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain