SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4241

Length: 2513 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene4241
CGTCGTGACCTTGGCTGTCACTCAGTGGGTTGCCCCAAGTACGGGAGTGAGACGATATGGGGGGACGGATCCTGGATTTAAACGCCCGAACCGTAAGTTTGCTGTATCACCTTACAGGCCATTCTTCTAAAATGGCAGAAGCACGCATGAGAAGTGGCTAGATAAACGAATGATAACTTGATTGGGCGTTGCTTTACGTGTTTTCGTCTATTCAAAATGATGCAGTTACAGTATATACTGAAGTAGCGTGAAATTGGGGTTTAGGAGAGGTTCTAAGGTAAATGTCAAAGCAGAAGGATCTTGACTATTAAGGCGAAAGGAGTATCGAAGGGCCAAAGAAAGCGACACATGCTGTAATTTTCATGGGCAGATGATTCATCCATGATTTCTGTGAGAATGTAAGTGAGTCTTGTGCGAAGATCTCCTTGAACTAAATTGTGGGTCATTGTTTCCTTGGTATAGGGCTGGGTTCGAACTTTCGACCAGCTAAAACCAAGTGTATACTTGCAGAATCTTGCCTAACATATGAGCTGGGTTTAACATTTTTGTATTTAATTGTCAATTCCACCAACAGAAGGCCCCATCGGGACGATGGTTAATAAGACTCCTCACCTGCTTCTCATATCACTGTGATTTCTTGTATAGAATTCTGTTTTAGGTTTCTTGTCTTTCATCGTGGGCAGTAGGGAAGTATCAGCAAAATGCACAAGCAATCAAGCCTGAATCACCGCCGGGACGAAGAAGTCCAGGCCCCAGCAGATTCGGATCTCTATTCTCCCAAATCTGAGAAGCCTAAATCACTGCCAAAACCGATGCACTATGTCCTGAAAGAGCAGCGTTGGTTGTTTGTTTTGGTGGGTATGTTGATAGCCTCTACGATCTTCATTCTCCAGCCCAGTCTTGCAAAACGAGACATAAGGAAAAACATAGGTGGCGCCGAGAAATTTTTGTCCAACAAAGCGGGGAATTCTTGGGTTCAGAAGACAACCACTGTTTCCAGGATCGTGGGTGGTGTGAAGAGGCAGCCTATGAGAATAGTTGTAACAGGTGGGGCAGGATTTGTGGGCAGCCATCTGGTTGACAGGCTACTGGAGAGGGGAGACAATGTGATTGTTATCGATAATTTCTTCACTGGTAGAAAAGAGAATGTTATGCATCACTTCAAGAATCCTCGCTTCGAGCTCATCCGGCATGATGTTGTTGAGCCGATATTGTTGGAGGTCGATCAGATTTACCATCTGGCATGCCCTGCGTCTCCCGTTCACTACAAGTTCAATCCTGTGAAGACAATCAAGACAAATGTGATGGGGACATTGAACATGCTGGGTTTGGCAAAACGAATTGGAGCCCGCTTCTTGCTTACCAGTACAAGTGAGGTATATGGGGATCCTCTTCAGCATCCACAGACGGAGACATATTGGGGAAATGTCAATCCTATAGGTGTTAGAAGCTGTTATGATGAGGGTAAACGTACAGCTGAGACTTTGACGATGGACTATCACCGGGGGGCCAATGTGGAGGTCCGCATTGCACGTATATTCAACACATATGGACCCAGAATGTGCATCGATGATGGCCGTGTTGTTAGCAACTTTGTTGCTCAGGCACTGCGCAAAGAACCTTTGACGGTTTATGGTGACGGTAAACAAACACGGAGCTTTCAGTATGTTTCTGATTTGGTTGATGGACTGATTCGACTGATGGAAAGCAACCATATTGGACCTTTCAATCTTGGCAATCCTGGAGAGTTCACGATGTTAGAGCTTGCTCAGGTTGTGAAAGAAACAATAGATTCTACTGCAAGGATTGAATACAAAGAAAACACAGCTGATGATCCCCATAAAAGGAAGCCAGATATTACAAAGGCGAAAGATCTTCTGAAGTGGGAACCAAGAATTTCTTTGAGGGAAGGACTTCCATTGATGGTCGAAGATTTTCGCAAACGTATTTTTGACAACTGAAAGAGACACAAATCAGCAGGATTGGCTGATACCTGTTCAAATTGTAGTTATGATCTGCATGTTCTTCCTTGGCTGATACCTGTTCTAGATATGGTAAAAGAATATTATGAAAAGTTTAAGAAGCAGCAGTATAATTGAGCGCCATTTTTCAAGCAGGTTGAAAGTTCAATTATTTCACTTTATGTGAGTTGAAAATATATTCGGGGATATTACTCTGATGGAATTCATCACCAAATATGGAGAAGCAGGCCTCTTTTTTACCAAAAGAGGCCCATGATTGTTGCTTTCATAGAAGGGTGTGTGAAGTGGCTGAAAAGCACGAGGGATATATGTAGTGCAAAGTTCAAACAACAGCTTTATGTAAATTTCCAGAACATTATTTTTTTGGCATGCTTAAGACATCTGCTCCTTCAAAAAATTGATTCACAGCTGATAAGCTCCCTTCGGAGCTAACCATTATTGGAGATTTTGGTTGAAATTCTATCGCATATTCGTTTGCTAACTTGATGGGTACTCTTCATATTTTAATTGAATCCACTCCTTGTATTCTAA

Ace file of the UniGene sp_v1.1_unigene4241 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to UDP-glucuronic acid decarboxylase 1 isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001983CC7	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	udp-glucuronic acid decarboxylase 2	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	83%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	D-xylose metabolic process	GO:0042732	Biological Process	83%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	83%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	83%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUL8

Fln msg:

Fln protein: MHKQSSLNHRRDEEVQAPADSDLYSPKSEKPKSLPKPMHYVLKEQRWLFVLVGMLIASTIFILQPSLAKRDIRKNIGGAEKFLSNKAGNSWVQKTTTVSRIVGGVKRQPMRIVVTGGAGFVGSHLVDRLLERGDNVIVIDNFFTGRKENVMHHFKNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLQHPQTETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVDGLIRLMESNHIGPFNLGNPGEFTMLELAQVVKETIDSTARIEYKENTADDPHKRKPDITKAKDLLKWEPRISLREGLPLMVEDFRKRIFDN*

Protein Length: 421

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGGTTGCCCCAAGTACGGGAGTGAGACGATATGGGGGGACGGATCCTGGATTTAAACGCCCGAACCGTAAGTTTGCTGTATCACCTTACAGGCCATTCTTCTAAAATGGCAGAAGCACGCATGAGAAGTGGCTAGATAAACGAATGATAACTTGATTGGGCGTTGCTTTACGTGTTTTCGTCTATTCAAAATGATGCAGTTACAGTATATACTGAAGTAGCGTGAAATTGGGGTTTAGGAGAGGTTCTAAGGTAAATGTCAAAGCAGAAGGATCTTGACTATTAAGGCGAAAGGAGTATCGAAGGGCCAAAGAAAGCGACACATGCTGTAATTTTCATGGGCAGATGATTCATCCATGATTTCTGTGAGAATGTAAGTGAGTCTTGTGCGAAGATCTCCTTGAACTAAATTGTGGGTCATTGTTTCCTTGGTATAGGGCTGGGTTCGAACTTTCGACCAGCTAAAACCAAGTGTATACTTGCAGAATCTTGCCTAACATATGAGCTGGGTTTAACATTTTTGTATTTAATTGTCAATTCCACCAACAGAAGGCCCCATCGGGACGATGGTTAATAAGACTCCTCACCTGCTTCTCATATCACTGTGATTTCTTGTATAGAATTCTGTTTTAGGTTTCTTGTCTTTCATCGTGGGCAGTAGGGAAGTATCAGCAAA_-_ATGCACAAGCAATCAAGCCTGAATCACCGCCGGGACGAAGAAGTCCAGGCCCCAGCAGATTCGGATCTCTATTCTCCCAAATCTGAGAAGCCTAAATCACTGCCAAAACCGATGCACTATGTCCTGAAAGAGCAGCGTTGGTTGTTTGTTTTGGTGGGTATGTTGATAGCCTCTACGATCTTCATTCTCCAGCCCAGTCTTGCAAAACGAGACATAAGGAAAAACATAGGTGGCGCCGAGAAATTTTTGTCCAACAAAGCGGGGAATTCTTGGGTTCAGAAGACAACCACTGTTTCCAGGATCGTGGGTGGTGTGAAGAGGCAGCCTATGAGAATAGTTGTAACAGGTGGGGCAGGATTTGTGGGCAGCCATCTGGTTGACAGGCTACTGGAGAGGGGAGACAATGTGATTGTTATCGATAATTTCTTCACTGGTAGAAAAGAGAATGTTATGCATCACTTCAAGAATCCTCGCTTCGAGCTCATCCGGCATGATGTTGTTGAGCCGATATTGTTGGAGGTCGATCAGATTTACCATCTGGCATGCCCTGCGTCTCCCGTTCACTACAAGTTCAATCCTGTGAAGACAATCAAGACAAATGTGATGGGGACATTGAACATGCTGGGTTTGGCAAAACGAATTGGAGCCCGCTTCTTGCTTACCAGTACAAGTGAGGTATATGGGGATCCTCTTCAGCATCCACAGACGGAGACATATTGGGGAAATGTCAATCCTATAGGTGTTAGAAGCTGTTATGATGAGGGTAAACGTACAGCTGAGACTTTGACGATGGACTATCACCGGGGGGCCAATGTGGAGGTCCGCATTGCACGTATATTCAACACATATGGACCCAGAATGTGCATCGATGATGGCCGTGTTGTTAGCAACTTTGTTGCTCAGGCACTGCGCAAAGAACCTTTGACGGTTTATGGTGACGGTAAACAAACACGGAGCTTTCAGTATGTTTCTGATTTGGTTGATGGACTGATTCGACTGATGGAAAGCAACCATATTGGACCTTTCAATCTTGGCAATCCTGGAGAGTTCACGATGTTAGAGCTTGCTCAGGTTGTGAAAGAAACAATAGATTCTACTGCAAGGATTGAATACAAAGAAAACACAGCTGATGATCCCCATAAAAGGAAGCCAGATATTACAAAGGCGAAAGATCTTCTGAAGTGGGAACCAAGAATTTCTTTGAGGGAAGGACTTCCATTGATGGTCGAAGATTTTCGCAAACGTATTTTTGACAACTGA___AAGAGACACAAATCAGCAGGATTGGCTGATACCTGTTCAAATTGTAGTTATGATCTGCATGTTCTTCCTTGGCTGATACCTGTTCTAGATATGGTAAAAGAATATTATGAAAAGTTTAAGAAGCAGCAGTATAATTGAGCGCCATTTTTCAAGCAGGTTGAAAGTTCAATTATTTCACTTTATGTGAGTTGAAAATATATTCGGGGATATTACTCTGATGGAATTCATCACCAAATATGGAGAAGCAGGCCTCTTTTTTACCAAAAGAGGCCCATGATTGTTGCTTTCATAGAAGGGTGTGTGAAGTGGCTGAAAAGCACGAGGGATATATGTAGTGCAAAGTTCAAACAACAGCTTTATGTAAATTTCCAGAACATTATTTTTTTGGCATGCTTAAGACATCTGCTCCTTCAAAAAATTGATTCACAGCTGATAAGCTCCCTTCGGAGCTAACCATTATTGGAGATTTTGGTTGAAATTCTATCGCATATTCGTTTGCTAACTTGATGGGTACTCTTCATATTTTAATTGAATCCACTCCTTGTATTCTAA

Fln Alignment:

sp_v1.1_unigene4241___MHKQSSLNHRRDEEVQAPADSDLYXXXXXXXXXXXXPMHYVLKEQRWLFVLVGMLIASTIFILQPSLAKRDIRKNIGGAEKFLSNKAGNSWVQKTTTVSRIVGGVKRQPMRIVVTGGAGFVGSHLVDRLLERGDNVIVIDNFFTGRKENVMHHFKNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLQHPQTETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVDGLIRLMESNHIGPFNLGNPGEFTMLELAQVVKETIDSTARIEYKENTADDPHKRKPDITKAKDLLKWEPRISLREGLPLMVEDFRKRIF
A9NUL8______________MHKQSSLNHRRDEEVQTPADADPYSPKAVKPKSLPKPVHYLLKEQRWLFVLVGMLIASTLFILGPNLAKRDIRKTIGGSEKFVSKGVEKSGVQKTITVHRLVAGVRRQPLRIVVTGGAGFVGSHLVDRLLERGDHVIVIDNFFTGRKENVMHHFKNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLQHPQTETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMESNHVGPFNLGNPGEFTMLELAEVVKETIDSNAKIEFKENTADDPHKRKPDITKAKDLLKWEPKISLREGLPLMVEDFHKRIF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
2083			25	75	0.996473
2088	25			75	0.996473
2089		75		25	0.996473
2090	75		25		0.996473
2091	75		25		0.996473
2092		25	75		0.996473
2093		25		25	0.995533
2094	25		75		0.996473
2096		25	75		0.996473
2097	75		25		0.996473
2098			25	75	0.996473
2100		25		50	0.995533
2101	50			50	1.0
2102	25	75			0.996473
2104		50	25		0.995533
2105	75			25	0.996473
2107	75		25		0.996473
2108	66	33			0.997452
2112			33	66	0.997452
2191		66		33	0.997452
2329	75		25		0.996473
2331		75	25		0.996473
2332			75	25	0.996473
2333		75	25		0.996473
2334	25	75			0.996473
2337	75		25		0.996473
2338		25		75	0.996473
2343			25	75	0.996473
2345	75	25			0.996473
2346	25			75	0.996473
2349			25	75	0.996473
2350	25			75	0.996473
2407	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain