SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4207

Length: 1143 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4207

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ankyrin repeat protein-like n=7 Tax=Poaceae RepID=Q6KA74_ORYSJ	-	-	6.0e-38	53%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	65%
Blast2go	protein	-	-	1.14467e-37	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat domain-containing protein 13	IPR021832	-	1.14467e-37	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A3ACI8

Fln msg: your sequence is shorter than subject: 205 - 544

Fln protein: KGKKEEDKTKKPSTSSDSQHEGEYKKGVKPVLWLTPDFPVKTEEFLPLLDILANKVKAVRRLRDLFTTKLPPGTFPVKVAIPVVPTIRVVITFSKFEELQSSEEFATPVSSPEFFQDAKGKDVDAPKSSSSWMSWLRGSQSEPVNEAMCLEDCLEGDLEPFHIPSDYTWVGMNEKKRRMKMKKSKNRKDKKPDSASRERSDDKD*

Protein Length: 206

Fln nts: AAAAGGGCAAGAAAGAGGAAGATAAAACCAAGAAGCCGAGCACAAGCAGTGATTCTCAACATGAAGGaGAATACAAGAAAGGGGTGAAGCCAGTGCTGTGGCTGACACCTGACTTTCCTGTCAAAACTGAAGAATTCCTGCCTTTGCTTGACATCTTGGCAAACAAGGTTAAAGCTGTTCGTCGATTGAGGGACCTGTTCACAACAAAACTGCCTCCTGGAACTTTTCCTGTCAAGGTAGCAATTCCAGTTGTTCCTACAATTAGAGTTGTTATAACATTCAGCAAATTTGAGGAACTGCAATCTTCAGAAGAATTTGCAACACCGGTTTCAAGTCCTGAATTTTTCCAAGATGCCAAAGGGAAAGATGTTGATGCTCCAAAATCCTCGAGCTCTTGGATGTCTTGGCTTAGGGGTTCTCAAAGTGAGCCAGTGAATGAAGCTATGTGCCTGGAGGATTGCTTGGAAGGTGATTTGGAACCCTTTCACATACCGAGTGATTATACTTGGGTTGGCATGAATGAAAAGAAGCGGCGAATGAAGATGAAAAAGTCTAAGAACCGGAAAGATAAGAAGCCAGATTCAGCGAGTAGAGAAAGGAGTGATGACAAGGATTAG___AGGTTCCAAATATGTTATCCTTCTGATTTTATGGAGTTGGGCATTGTGATCTTGACATCATTACATGGGATGGAAATGGTAATCCACATTTTCTCATACCATTGGCTCTTGACCCAGTTACCTTTTTGTGAAGGAAATGATTTTTTGCAAGATAACAGGGAAAAAGATGGAAAGGGAACAGTATACAAGTTTGTTTTGTTCCCTATTATTCAGATGTTCTCTATCTTGTATGTTGTAATTGCTGTTCTGCTTTATAGTTCAACAATTTGCTCATATCTGCTTATATTTGTATTCTTCAATCTTATTGTTTGGATACGAGTGCTATTTGTCATTATGTAAAATCTATTGAAATATATGATCATGCTATTACACTAACTTCATTGAAGGGCGTATTACAGAAACCAAATCTATTTTACAGCATGTTTAAAAATCAATCACATCCTTAAAGGGGTTGCAAACGGAGCAATGATATCTCATGTCTTAACAGGATGGAAAAGAAAAGTGCATTAAGCATGACAAGATATTC

Fln Alignment:

sp_v1.1_unigene4207___QHEGEYKKGVKPVLWLTPDFPVKTEEFLPLLDILANKVKAVRRLRDLFTTKLPPGTFPVKXXXXXXXXXXXXXXFSKFEELQSSEEFATPVSSPEFFQDAKGKDVDAPKXXXXXXXXXXXXXXEPVNEAMCLEDCLEGDLEPFHIPSDYTWV
A3ACI8______________KHESEYKKGLRPVLWLTPDFPLKTDELIPLLDVLANKVKAVRRLRELLTTKLPPGTFPVKIAIPIVPTIRVIVTFTKFEELQPLDEFATPPSSPTQFQDAKGKESEGSGSWYSWVRGGRGAQSSDSGDSRNWKD----EVDPFQIPSDYTWV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
793	16	16	66		0.988813
794			66	33	1.0
795	71		14	14	0.984337
797	57		42		1.0
798		57	42		1.0
799	57		14		1.0
800		14	85		0.993533
802	85		14		0.993533
808		14	85		0.993533
810		14		85	0.993533
811	14			85	0.993533
844		87	12		0.992554
845			12	87	0.992554
846			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain