SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4170

Length: 1129 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4170 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	26%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Retrotransposon gag protein	IPR005162	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q2XNX9

Fln msg: STOP codon was not found. Distance to subject end: 97 aas, your sequence is longer than subject: 253 - 176

Fln protein: MSPTRSGYKELGLELVEPLQDQPRKSRRPPMADEKKDEGAGDPIRILLEEALERQRNAMMDSFAQILQRLPRGDASASSSYSGNATPFKVQVNFEIPIFEGQIDADAVDKWLNLLDGYFSVHEFSSRENIVFALLKAAPHVKDWWETYCEQKDESTGSLFSAAPTWNDFRDAIKEQCYPVKSYEDKYIKWTTLRQGRDQDVPEFTNIFHTLRTQLGIKDSELHLVLKYHGSHTETARKKWSTWNISSLGIAYP

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTAGGGTTAGATTTCGGAATGTGAAGGGATTTCCATTGTTTCTCAATAATAAATAGGCCTTCGAGCCTCATTGTAACACAGTTCGGAACAGTTCAGAGGCATGTAGCCGACACATCTCTTCTCAGAGATAAGCTACCATCGCCCTAGCTGGGTTATTTCTATTTGTAAGCATATTTCAGTATTCTACAGTAATGAAATGAAGTATTATTTCCGCTGCATATCTGTCTTTATGGTTATCGCATCTCTGTGTTTATGGTTATCTCTGTAATTTATTGCGTTCCTGTTTAAATCCGGATCAGTGGTATCAGAGCGGTCTGCTTTTTCTCTGTTTTTCTTTGC_-_ATGTCCCCAACGAGGTCGGGATATAAGGAGTTAGGGCTTGAACTGGTCGAACCTTTGCAAGACCAGCCTCGCAAATCCCGACGGCCTCCCATGGCGGATGAGAAGAAAGACGAGGGGGCAGGAGATCCTATCAGAATCTTGCTCGAAGAAGCCCTCGAGCGGCAACGGAACGCGATGATGGATAGTTTTGCGCAGATCCTTCAGCGGCTACCCAGAGGCGACGCATCGGCTTCCAGCAGCTACTCTGGAAATGCCACGCCGTTTAAGGTACAAGTTAATTTTGAAATCCCCATCTTCGAGGGTCAAATAGACGCAGATGCCGTAGATAAATGGTTAAATCTGCTAGATGGGTATTTTTCTGTTCATGAATTTTCAAGTCGGGAAAATATTGTTTTCGCTCTTCTCAAAGCAGCCCCCCACGTCAAGGACTGGTGGGAAACCTACTGCGAGCAGAAGGATGAAAGTACAGGCTCACTGTTTTCAGCCGCTCCCACTTGGAATGACTTCCGGGATGCCATCAAGGAGCAGTGCTACCCTGTCAAAAGCTATGAGGACAAATACATCAAATGGACCACACTGCGGCAGGGACGAGACCAAGATGTGCCAGAGTTCACAAATATTTTTCATACCCTTCGTACACAGTTGGGTATCAAAGATTCTGAGCTGCATCTGGTACTCAAATACCACGGCTCCCACACAGAGACAGCCAGGAAGAAATGGAGTACTTGGAACATCTCCTCGCTCGGCATAGCGTACCCCAT

Fln Alignment:

sp_v1.1_unigene4170___TRSGYKELGLELVEPLQDQPRKSRRPPMADEKKDEGAGDPIRILLEEALERQRNAMMDSFAQILQRLPRGDASASSS---------------------------YSGNATPF---KVQVNFEIPIFEGQIDADAVDKWLNLLDGYFSVHEFSSRENIVFALLKAAPHVKDWWETYCEQKDES
Q2XNX9______________TRSQYKKLGEILISLEGDQDLRK-------EKMTEG-DNSARI---DALEKQIETIGLTLTQLVSLIHGGGKQGESSSKKIVESDVERVDSYSDEEEETIKTALHQGGKNSYQNLKIDFKVEILIYDGSVDVERLDDWIERMETYFTLYGYSSKEKIVFTTLKLSGHALTWWKSYCKQEKKA

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
541		33	66		0.997452
543	33		66		0.997452
546	25		75		0.996473
547		75	25		0.996473
554			75	25	0.996473
555		25		75	0.996473
557		25	75		0.996473
558		75		25	0.996473
560	50		50		1.0
564	75	25			0.996473
565	75		25		0.996473
566	25		75		0.996473
573		75	25		0.996473
582	75		25		0.996473
594	25		75		0.996473
602	25		75		0.996473
603		75		25	0.996473
609	25		75		0.996473
620		75		25	0.996473
631	20	80			0.995493
633			80	20	0.995493
634	80		20		0.995493
635			20	80	0.995493
636	80		20		0.995493
650	20	80			0.995493
654	20		80		0.995493
660	20	80			0.995493
668		80		20	0.995493
669		80		20	0.995493
681		40		60	1.0
687	40		60		1.0
704		80		20	0.995493
722	40		60		1.0
731	20	80			0.995493
786	33		66		0.997452
812	33		66		0.997452
813			66	33	0.997452
819	33		33	33	0.997753
821		66		33	0.997452
834	66		33		0.997452
840	75	25			0.996473
855		50	25	25	0.995533
857		75		25	0.996473
859			75	25	0.996473
863		25		75	0.996473
878	50		50		1.0
884			50	50	1.0
915	50	50			1.0
917		25	75		0.996473
918			50	50	1.0
920	50		50		1.0
926		25		75	0.996473
964	25		75		0.996473
994			50	50	1.0
996	20		80		0.995493
1015	20		80		0.995493
1017	40			60	1.0
1025	25		75		0.996473
1041			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain