SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4169

Length: 1155 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4169

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	antioxidant/ oxidoreductase	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	antioxidant oxidoreductase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPM4

Fln msg: your sequence is longer than subject: 252 - 193

Fln protein: MATAASKLMCSALLTPARICPITHHSRNLSVLLLGGYSNWDWNWKHRPSTLNRLVVRAARIESKAQLPLKSRAPEFELPEPLTGKVRRLDDFQGYPALLVMFICNHCPFVIHLKNDIVKLTNEYIPKGVAVVAISSNSTVTHPMDGPDFMAEEAKRFQFPFPYLYDESQETARAFGAVCTPEFFLFKRDGQDPFELAYHGQFDDSRPNNNKPITGRDLRLALDSVLNGKPISFPQKPSVGCSIKWHPGNTI*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGCCCCTCTAAACAATTCGGATAAATTTGCAGACTCTCTGGTTGTCATTTTAAATGCCCATCGTCTCACCCATACGATTTTGAAGTCAAGTCCATCGATAGTTTACTCCACTATCAGGATTAGTTGATCATTACCGGTCCGA_-_ATGGCTACAGCGGCTTCGAAGCTCATGTGCAGTGCCCTCCTCACCCCTGCAAGGATTTGTCCAATTACTCATCATTCCCGCAATCTCTCAGTGTTACTGTTAGGTGGCTATAGCAATTGGGATTGGAATTGGAAACATCGGCCATCAACTTTAAACAGGTTAGTGGTTCGAGCAGCTCGAATAGAATCCAAGGCCCAACTGCCGCTCAAGTCCAGAGCCCCTGAGTTTGAGCTACCAGAGCCTCTGACTGGAAAAGTGCGGAGATTGGATGATTTCCAAGGATATCCTGCATTGCTGGTGATGTTTATTTGCAACCACTGTCCTTTTGTTATACATTTGAAGAACGATATTGTGAAGCTTACAAATGAATATATCCCGAAGGGAGTTGCTGTTGTAGCAATATCTTCTAATTCAACCGTCACTCACCCCATGGATGGTCCAGATTTCATGGCTGAAGAAGCTAAGCGATTCCAGTTTCCATTTCCGTATCTTTATGATGAGTCACAAGAAACTGCACGGGCTTTTGGAGCTGTGTGCACGCCAGAATTTTTCCTTTTCAAAAGGGATGGACAGGATCCATTTGAGCTTGCTTATCATGGGCAGTTTGATGATTCACGACCTAATAATAATAAACCCATTACAGGACGTGACTTGAGGTTGGCTTTAGACTCTGTGTTGAATGGAAAACCAATAAGTTTTCCACAAAAGCCAAGTGTTGGATGCAGCATCAAGTGGCACCCGGGTAATACTATCTAG___TGTTCTTCTTGGTCATTTAATGGATTAATTATTTTAAATTACCACCATGAACTTCAAAATGGTTGGAATTTGACATTTGACCATAGTGTCATTTCTTTACTTTAGCCAATGATCAACGTGAATGTGAGAATTAGTTTCAGATTGATCATCGTTTCGCTTGGCTTGGACAGCCCATATACCTCAGTTTTTTGTATTCTTTTTCCTTATTCGATAGTTTGTAACAGAAGCACC

Fln Alignment:

sp_v1.1_unigene4169___IESKAQLPLKSRAPEFELPEPLTGKVRRLDDFQGYPALLVMFICNHCPFVIHLKNDIVKLTNEYIPKGVAVVAISSNSTVTHPMDGPDFMAEEAKRFQFPFPYLYDESQETARAFGAVCTPEFFLFKRDGQDPFELAYHGQFDDSRPNNNKPITGRDLRLALDSVLNGKPISFPQKPSVGCSIKWHP
A9NPM4______________LESKT-MPLGSTAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYIPRGLAIAAISSNSTVTFPEDGPDFMAEDARKFEYPFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKWHP

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
15		66	33		0.997452
24	50	50			1.0
26	50	50			1.0
82		16		83	0.994512
83			16	83	0.994512
84	83			16	0.994512
85	83	16			0.994512
86	83		16		0.994512
89	16	83			0.994512
92	83			16	0.994512
94		83	16		0.994512
97		83	16		0.994512
102		83		16	0.994512
108			83	16	0.994512
109	83			16	0.994512
170	18			81	0.999994
278	46		53		1.0
279		53		46	1.0
414			77	22	0.999999
721	14			85	0.993533
727		87	12		0.992554
729		14		85	0.993533
730			14	85	0.993533
731	14			85	0.993533
732		85	14		0.993533
734	85	14			0.993533
735	85	14			0.993533
736	85			14	0.993533
737	14		71	14	0.984337
740	85	14			0.993533
743		14	85		0.993533
746	85			14	0.993533
747		14	85		0.993533
748	14		85		0.993533
845		75	25		1.0
915		37	62		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
789	800	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain