SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4167

Length: 746 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4167

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os08g0155400 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0J7Y1_ORYSJ	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	nitrate transporter	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	70%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	70%
Blast2go	response to wounding	GO:0009611	Biological Process	70%
Blast2go	nitrate transport	GO:0015706	Biological Process	70%
Blast2go	response to nitrate	GO:0010167	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
459	66		33		0.997452
460	66			33	0.997452
462	66			33	0.997452
464	33		66		0.997452
465		33	66		0.997452
467	66			33	0.997452
468		66		33	0.997452
469		66	33		0.997452
470		66	33		0.997452
472	66			33	0.997452
473			33	66	0.997452
474	66			33	0.997452
478	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain