SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4161

Length: 1337 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4161

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-linked n-acetylglucosamine transferase, ogt, putative n=1 Tax=Ricinus communis RepID=B9SX16_RICCO	-	-	63%
FL-Next	sp=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Hordeum vulgare (Barley).	-	-	78%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	80%
Blast2go	regulation of oxygen and reactive oxygen species metabolic process	GO:0080010	Biological Process	80%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%
Blast2go	cytosol	GO:0005829	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O82422

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 32 aas, putative chimeric sequence, your sequence is shorter than subject: 228 - 944

Fln protein: CDSVRQRFLSTLENLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLHQVGLTNLIAQTEDEYVSKALELASNIPLLSSLRMCLRERMLKSKISDGHNFVHGLESTYRKLWHRYCEGDVPSLRRCNMENLHEGSTTMSGVGVEDMPNDANGKEIFITRTSLLNGVNPTSLPMPIFSNPETKLNGESQSVKQ*

Protein Length: 229

Fln nts: GCTGTGATAGTGTGAGGCAGAGATTTCTTTCAACCTTGGAGAATCTCGGATTAGAGTCCTTGCGTGTTGATCTTTTACCTCTGATTTTGCTTAACCATGATCACATGCAAGCATACTCCCTAATGGATATCAGCTTGGATACATTTCCATATGCAGGAACGACCACCACATGTGAATCGTTGTATATGGGCGTTCCATGTGTTACCATGGCAGGGTCTGTTCATGCTCACAATGTGGGTGTAAGCCTTCTGCACCAAGTTGGTTTGACAAATTTAATTGCTCAAACTGAAGATGAGTATGTCAGCAAGGCATTAGAGTTAGCTTCTAACATTCCTTTGCTCTCATCTCTGAGGATGTGTCTTCGGGAACGGATGCTGAAGTCCAAGATTTCTGATGGACATAACTTTGTTCATGGTTTGGAATCAACATACCGAAAGCTATGGCACCGGTATTGTGAAGGGGATGTTCCTTCCCTGAGGCGATGCAACATGGAAAACCTACATGAGGGGTCCACAACTATGTCAGGGGTTGGTGTTGAGGACATGCCTAATGATGCAAATGGTAAAGAAATTTTCATTACACGCACCTCTCTTTTAAATGGCGTGAATCCCACTTCACTACCTATGCCCATTTTTTCCAACCCTGAAACAAAGTTAAATGGAGAGTCCCAGTCAGTGAAGCAATGA___GGAAACCGATGTAATTAGTGATGTTTGAATATATTCAGGTTGTGTCCTACAGGCCCTGGTTGCATTTAATTGAACAAACGTGGAAGTCACCAATTAAAACCAGGTCAGAGGAAATTTATTTCAGTCAATTTTGGTGGAGGTTCTGCTGGTTCCAAAGGTGCACATTCTGAATGACTGTTGTTGTCCTTTGAGAAACAAGCAAATGTTCTTTGCTATAGTTCCTATGCTGAGTAAGAGGTTGTTGGAGCTACATACCATCAAGGAATTATTGTTACCCTAAGGAACACATATTTTTCTTTATGGAGTATAGGAAGCATTAACCTGCACTCTTATTGTAGTGTCTTGACTCTTGAGTATGAATCTCGTATAGATTTCATCAGTGATGCTGTAAAATACCGAATCCTACTACGAACAATTATGACTGTGCCCACCTATGTAAATTAGCTCACGGGTTCAAAATTGGAAGAACCCCCCAAACAGGCTTTGATTGGAAGCTAATTGTAGGGTTCCCTTGATGTATACTGCAGCTGCCAATGAGTGCTAGCTGATCTTAGATATTACTTTCTCAAACTGAGTTGGAATTGATCTTGCTATTATACAATTTTCAATATGGGCATTACTCTTTTCAATCTAATGCACGACATATATGGA

Fln Alignment:

sp_v1.1_unigene4161___CDSVRQRFLSTLENLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLHQVGLTNLIAQTEDEYVSKALELASNIPLLSSLRMCLRERMLKSKISDGHNFVHGLESTYRKLWHRYCEGDVPSLRR
O82422______________CDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKTEDEYVSLALDLASDVSALEELRKSLRELMIKSPVCDGESFTRGLESAYRSMWHRYCDGDSPALRR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
953		15		84	1.0
954	84		15		1.0
956		15		84	1.0
959			16	83	1.0
965	83		5		0.999887
966	83		5	11	0.999887
969	83	11	5		0.999887
970	83			16	1.0
971		88	11		0.999937
972	88			11	0.999937
975		16		83	1.0
976	88			11	0.999937
977		11		83	0.999887
978	11			88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain