SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4158

Length: 453 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene4158
TTATGGATAAGTCAGGACAAATTCGAGTGGACGCATTGGTGGAAAATAAAAGATGGATGATGATCTGGCAACGGCCCCTCACTCAATGCGAGGTTTATGCCATATGCGGGCCTTATGGATCGTGCAATAATAACAATGTTCAGTCCTGCAACTGCGTGCCAGGTTTTATCCCCATAGACAGCCAAGAAATGGAAATCTCAGCAGTGGTCAAGCGGCTGCGTTCGGAAGACGCCGTTGCGATGCAGTCATGCGAGAAACCAGAGCAGCACGGACCGGTTTGTAGAAATAAGTGGCACATCTGTGCCCTCTCACGGGGTTGAATACAAAGGCCAAAAGCGGTGCCGGGAAGCCTGTCTCAGCAATTGCTCGTGCACTGCATACGCTTACGTTAACGGCACTTCGCAGAGGTGTGTAATGTGGTTCGGTGAATTACTAAATTTGTACGATACTTCC

Ace file of the UniGene sp_v1.1_unigene4158 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-locus-specific glycoprotein S6, putative n=1 Tax=Ricinus communis RepID=B9SFF5_RICCO	-	-	6.0e-19	36%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	32%
Blast2go	protein	-	-	6.90459e-19	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	S-locus glycoprotein	IPR000858	-	6.90459e-19	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64781

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 408 aas, your sequence is shorter than subject: 106 - 831

Fln protein: MDKSGQIRVDALVENKRWMMIWQRPLTQCEVYAICGPYGSCNNNNVQSCNCVPGFIPIDSQEMEISAVVKRLRSEDAVAMQSCEKPEQHGPVCRNKWHICALSRG*

Protein Length: 107

Fln nts: TTATGGATAAGTCAGGACAAATTCGAGTGGACGCATTGGTGGAAAATAAAAGATGGATGATGATCTGGCAACGGCCCCTCACTCAATGCGAGGTTTATGCCATATGCGGGCCTTATGGATCGTGCAATAATAACAATGTTCAGTCCTGCAACTGCGTGCCAGGTTTTATCCCCATAGACAGCCAAGAAATGGAAATCTCAGCAGTGGTCAAGCGGCTGCGTTCGGAAGACGCCGTTGCGATGCAGTCATGCGAGAAACCAGAGCAGCACGGACCGGTTTGTAGAAATAAGTGGCACATCTGTGCCCTCTCACGGGGTTGAATACAAAGGCCAAAAGCGGTGCCGGGAAGCCTGTCTCAGCAATTGCTCGTGCACTGCATACGCTTACGTTAACGGCACTTCGCAGAGGTGTGTAATGTGGTTCGGTGAATTACTAAATTTGTACGATACTTCC

Fln Alignment:

sp_v1.1_unigene4158___ENKRWMMIWQRPLTQCEVYAICGPYGXXXXXXXXXXXXVPGFIPIDSQE
O64781______________DGKSWKLHFEAPTSSCDLYRACGPFGLCVRSRNPKCICLKGFVPKSDDE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
85		60	40		1.0
110		60		40	1.0
279	50	50			1.0
321		25		75	0.996473
322		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain