SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4146

Length: 1156 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4146 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone-lysine N-methyltransferase ASHR2 n=2 Tax=Arabidopsis thaliana RepID=ASHR2_ARATH	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	set-domain transcriptional regulator-like protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SET domain	IPR001214	-	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 384 - 491

Fln protein: VVTLAVIQWHKEERAYTLSEETSNIYNHYNSSKTRTMNTHLSTLQSFGQYLD*SNYHGNSNGKGAATGESSGD*RQRQSSRCNSALKSRSGTPARNPTSPILSVQSHKSKYKPKYESQQPKHKTPVTFCAHCFRALLPSSSPSSYPSCPSCIQPLLFCTFDCYSEAQASSHTQWVCKSLSILDSHSIDPETQTQARYLVAAYNLAIVSPASFQLLLLLQGDGIVDSQAHMLHSFMVSVMAFWPVQGQLPGFSPELTASLLAKDKHNAFGLMAPVQQHGERQVRAYAIYAQASFFNHDCLPNACRFEYVDKPGDHNTDIIIRALHDIAEGSEICLSYFPVNWPYSDRQKRLLEDYGFPCKCDRCRIEETWSDKAAWMKRCCHRE*

Protein Length: 385

Fln nts: CGTCGTGACCTTGGCTGTTATTCAATGGCACAAAGAAGAAAGAGCTTACACGCTCAGTGAAGAGACATCGAACATTTATAACCATTACAACTCTTCAAAAACACGCACAATGAACACTCACCTAAGCACTCTCCAGAGTTTTGGGCAGTATCTGGACTGATCAAATTATCATGGAAACAGCAACGGCAAAGGCGCCGCCACTGGTGAGAGTTCAGGAGATTGAAGGCAGAGGCAGAGCTCTCGTTGCAACTCAGCCCTTAAAAGCAGGTCAGGTACTCCTGCAAGAAACCCCACTTCTCCTATACTCTCAGTCCAATCCCATAAATCCAAATACAAACCCAAATACGAATCCCAACAACCCAAACACAAAACACCTGTTACATTCTGTGCCCATTGCTTTAGGGCATTGCTGCCTTCATCCTCCCCATCCAGTTATCCTTCATGCCCATCATGCATTCAACCTCTCCTCTTCTGCACTTTTGATTGCTATTCCGAGGCTCAGGCCTCCTCACACACGCAATGGGTATGCAAATCATTGAGCATTCTTGACTCCCATTCAATAGACCCTGAAACCCAAACACAGGCCCGATATCTAGTTGCAGCTTACAATTTGGCCATAGTTTCTCCAGCTAGTTTTCAACTCCTGCTGCTTCTGCAAGGGGATGGGATTGTTGATTCACAGGCTCACATGTTGCATTCATTTATGGTGAGTGTTATGGCATTCTGGCCTGTACAAGGACAGCTGCCCGGATTTTCTCCCGAACTAACTGCCTCCCTGCTGGCCAAGGATAAGCATAATGCATTTGGACTGATGGCACCTGTCCAGCAACATGGGGAGAGACAGGTCAGAGCATATGCAATATATGCACAGGCTTCCTTCTTCAACCATGATTGCCTTCCAAATGCGTGCAGATTTGAATATGTAGACAAGCCTGGAGATCACAATACGGATATTATCATTAGAGCTCTGCATGACATCGCTGAGGGATCTGAGATATGCCTAAGCTACTTCCCAGTTAATTGGCCATATTCTGATAGGCAGAAAAGGTTATTGGAAGACTATGGGTTTCCTTGCAAGTGTGACCGTTGCAGGATTGAGGAAACCTGGAGTGACAAAGCAGCATGGATGAAGAGATGCTGTCACAGAGAATGA___GAT

Fln Alignment:

sp_v1.1_unigene4146___AIYAQASFFNHDCLPNACRFEYVDKPGDHNTDIIIRALHDIAEGSEICLSYFPVNWPYSDRQKRLLEDYGFPCKCDRCRIEET
A9NWN6______________AFFPLQSCINHSCEPNCKAFK---REQDRDGQAILIAIRPIMKGEQIFISYIEEDMPWKERQA-LLSDYGFACKCCRCLQEQS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
982	14			85	0.993533
1058		14	85		0.993533
1060		28	71		1.0
1061		28		71	1.0
1062	14	14	71		0.984337
1063		14		71	0.984337
1064	16			83	0.994512
1079	75	25			0.996473
1124		33		66	0.997452
1126		33		66	0.997452
1127		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain