SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4138

Length: 1391 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4138

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase delta catalytic subunit n=5 Tax=Poaceae RepID=DPOD1_ORYSJ	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	90%
Blast2go	DNA-directed DNA polymerase, family B	IPR006172	-	90%
Blast2go	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	90%
Blast2go	DNA polymerase, palm domain	IPR023211	-	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEH5

Fln msg: Distance to subject end: 199 aas, your sequence is longer than subject: 290 - 228

Fln protein: MMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGILPEILEELLAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVVYGDTDSVMIQFGVPNIEEAMTLGREASDYISGTFTKPIKLEFEKIYYPYLLISKKRYAGLLWTKPDAYDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKAAHV

Protein Length: 291

Fln nts: CGAATATGGTACACGAGAGAGCAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCTGTTTCAGCACACTTTCTTGGTGAGCAGAAAGAAGATGTACATCATTCTATCATTTCTGATTTGCACAATGGGAATCCAGAGACAAGGAGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTCGTGACCTTGGCTGCTCACTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTGGACTTTGCGTCCTTGTATCCTTCAATC_-_ATGATGGCATATAATCTTTGTTATTGCAGCTTGGTGAGGTCAGAGGACATTGCAAAATTTAATCTCCAGCCAGAGTGTGTAAATAAAACACCATCGGGCGAGACTTTTGTGAAGCCAACTTTACAGAAGGGTATATTACCAGAGATCCTAGAAGAGTTACTGGCCGCCAGGAAAAGAGCCAAGGCAGACCTAAAGGAGGCTAAAGATCCTTTTGAAAAGGCTGTCTTGGATGGCCGACAATTGGCTTTGAAGATCAGTGCGAATTCAGTTTATGGGTTTACTGGTGCCACTGTTGGGCAATTGCCCTGTTTGGAGATTTCGTCGAGTGTGACGAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACAATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAAATATAGAAGAGGCCATGACGCTAGGGAGGGAAGCCTCAGATTATATTAGTGGTACATTTACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGTTGTTGTGGACAAAGCCAGATGCTTATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGCCTGCTGGTGAAGAACTTGGTTACAGAGTGCCTTCACAAAATACTCATTGATCGTGACATACCTGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACTTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTATGCAGTCAAGGCAGCACATGTG

Fln Alignment:

sp_v1.1_unigene4138___MNRMDLSLLVITKGLTKTGDDYAVKAAHV
D5AEH5______________MNRMDLSLLVITKGLTKTGDDYAVKAAHV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
753		20		80	0.995493
881	75		25		0.996473
883	75			25	0.996473
885	75		25		0.996473
886	75	25			0.996473
889	75			25	0.996473
891	25		75		0.996473
892		75	25		0.996473
895		25	75		0.996473
896	25			75	0.996473
897			25	75	0.996473
899	75	25			0.996473
900	75	25			0.996473
1191	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain