SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4129

Length: 1239 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4129 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rac-like GTP-binding protein 3 n=6 Tax=Poaceae RepID=RAC3_ORYSJ	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	small gtpase	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	91%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	91%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	91%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	91%
Blast2go	Small GTP-binding protein domain	IPR005225	-	91%
Blast2go	Ras	IPR013753	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN97

Fln msg:

Fln protein: MSCSRFIKCVTVGDGAVGKTCMLICYTTNKFPTDYVPTVFDNFSVNVLVGGSTINLGLWDTAGQEDYNRLRPLSYRGTDVFILAFSLISQASYENVSKKWMPELRHYAPGVPVVLVGTKLDLREDKRYLADNLGTTPITTAQGEELRKQVGAAAYIECSSKTQQNVKAVFDLAIKVVMQPPVLKEKKKKKRKYHKACAIL*

Protein Length: 202

Fln nts: AACGTTTGTGACATGCATTTATCTTCCAATCCCCTTGGTAGAGCTTCTCAGTTGAAATCTCAGTATATCTGAAAACTACCTCAGTTAGACCCAAAGATTTAAATGCTTCAAACTGATTTAGCTGATTGTGCATTCCTGAAATCTGCCTAAATCACACACAATGTATGGGATTTGAATCTCAGAAGATTGTTATGTATATATACATTTGGCGCGGTCCTTTCTTTTAATGCTGGCATTGTTTATTTACAGAAATACATTTTGCAGCCATTCTTCAGTAAAACGTTGGGTATTCTTGAACTTTGGTATATGAGGACAGAAGGGCTTTAGAATTTCAGGGTTTAGCCTTGAGATACTATTGACTTCAGTTCAGCTTTTCGGCCATTGAGACAGAGATGAGAGTTTTCCCTGTTTAGAAGGAAGGAGGATCAGAATTCAAAGGTTTTCTAGTCTGGAGTTTTGTAATTTTTTGCTGCA_-_ATGAGTTGTTCGAGGTTTATAAAATGTGTTACTGTTGGCGATGGAGCTGTTGGAAAGACTTGCATGTTGATTTGCTATACAACCAATAAGTTCCCCACTGATTATGTACCCACTGTGTTTGATAATTTCAGCGTCAACGTGCTTGTTGGTGGCTCAACTATAAATCTAGGTCTTTGGGACACTGCAGGTCAAGAAGACTATAATAGATTGAGGCCTCTTAGTTACCGCGGCACTGATGTATTTATCTTGGCATTTTCCTTGATCAGCCAGGCTAGCTATGAAAACGTCTCCAAGAAGTGGATGCCCGAGCTTAGACATTATGCTCCTGGAGTTCCAGTTGTTCTAGTTGGAACAAAATTAGATCTTCGTGAAGATAAGCGTTATTTGGCCGACAATCTGGGTACTACACCAATAACAACTGCACAGGGTGAGGAGTTGAGGAAACAGGTCGGTGCTGCTGCATACATAGAGTGCAGCTCAAAGACTCAACAGAATGTTAAAGCCGTGTTTGATTTGGCCATCAAAGTTGTCATGCAGCCACCAGTTCTCAAGGAAAAAAAGAAAAAGAAGAGAAAGTACCACAAGGCTTGTGCAATTTTATGA___CTGTAGTGTTTGACTGGTTTGATTCAAGTCAATTTAACCTGACCTAGAGTGACATGCCAAAGGAGCCATATTCTAGAATATATTTCACATTGGTAGGCGAAGATTTCTTAATATTGTATTATATTCATAACTGAAAAACGGTTAAGAGGTTGACATTCCAAG

Fln Alignment:

sp_v1.1_unigene4129___MSCSRFIKCVTVGDGAVGKTCMLICYTTNKFPTDYVPTVFDNFSVNVLVGGSTINLGLWDTAGQEDYNRLRPLSYRGTDVFILAFSLISQASYENVSKKWMPELRHYAPGVPVVLVGTKLDLREDKRYLADNLGTTPITTAQGEELRKQVGAAAYIECSSKTQQNVKAVFDLAIKVVMQPP
A9NN97______________MSTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGTSVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISRASYENVSKKWIPELRHYAPGVPIILVGTKLDLREDKQFYADHPGALPVTTDQGEELRKQIGAAVYIECSSKTQQNIKAVFDAAIKVVIQPP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
601	50		50		1.0
629	50		50		1.0
684	25		75		0.996473
794	66		33		0.997452
817		33		66	0.997452
821		66		33	0.997452
839	66			33	0.997452
884		60	40		1.0
943	75		25		0.996473
963		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain