SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4115

Length: 1799 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4115

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	gc-rich sequence DNA-binding factor, putative; K13211 GC-rich sequence DNA-binding factor	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	67%
Blast2go	gc-rich sequence dna-binding	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	71%
Blast2go		GO:0016481	Biological Process	71%
Blast2go	translation repressor activity	GO:0030371	Molecular Function	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%
Blast2go	phragmoplast	GO:0009524	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GC-rich sequence DNA-binding factor	IPR012890	-	0.0	71%
Blast2go	GC-rich sequence DNA-binding factor domain	IPR022783	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HF15

Fln msg: your sequence is shorter than subject: 380 - 509

Fln protein: RRDLGCHSRSASKKAASFASNGNANRHIEGESSSDESDSDCRAYQSSRDELLQTADQIFSDAAEEFSKLSLVKERFEGWKKLFSSTYRDAYMSLSAPAIFSPYVRLELLKWDPLYEDADLNNMQWHTLLFDYGMPENASDFEPDDADADLVPGLVEKVALPILHHEVAHCWDRLSTKGTKNAVSAVQVILTYIPPSNEALQELLAAVRMRLAEAVAELQVPNWSIPVMNAVSRAARIAAYKFGMSVRLLKNIGLWKGILAMPVLEQLALDELLCGKVLPHLRNIVQNIHDAITRTERVVAALLGVWTGPNYCGELSCKLLPLVEYIVTLGKELEKKQALGASTEDISGLARRLKKMLVELNEYDKARRILKTFQLKEAL*

Protein Length: 381

Fln nts: CGTCGTGACCTTGGCTGTCACTCTCGTTCTGCTTCAAAGAAAGCTGCATCTTTTGCTTCCAATGGCAATGCTAACCGACATATAGAGGGGGAATCTAGCAGTGATGAAAGTGATAGTGACTGTAGGGCTTATCAGTCTAGTCGAGATGAGTTGTTACAGACAGCTGATCAAATTTTTAGTGATGCAGCTGAAGAATTCTCAAAACTTTCTCTCGTCAAAGAAAGATTTGAGGGATGGAAGAAGCTCTTCTCCTCAACTTATCGTGATGCTTATATGTCTTTGAGTGCACCTGCAATTTTCTCCCCATATGTACGGTTGGAACTCCTAAAGTGGGATCCACTATACGAAGATGCGGATTTGAATAATATGCAATGGCATACTCTGCTTTTTGATTATGGTATGCCAGAAAATGCCAGCGATTTTGAACCAGATGATGCTGATGCAGACCTCGTTCCAGGACTTGTGGAGAAGGTTGCATTACCAATTTTGCATCATGAAGTTGCACATTGCTGGGATAGGTTGAGTACAAAAGGGACCAAAAATGCAGTTTCTGCAGTACAAGTAATTCTGACCTACATTCCTCCGTCAAATGAGGCGCTGCAAGAATTGTTGGCAGCAGTTCGTATGCGCTTGGCTGAAGCAGTCGCAGAACTACAGGTGCCAAATTGGAGCATTCCTGTTATGAATGCTGTATCTCGGGCAGCACGGATTGCTGCATATAAATTTGGTATGTCTGTTCGACTGCTAAAGAACATTGGTTTATGGAAAGGGATCTTGGCAATGCCAGTTTTGGAGCAGCTTGCCCTGGATGAACTTTTATGTGGGAAAGTGCTTCCCCATCTAAGGAACATTGTGCAGAATATTCATGATGCAATTACAAGGACTGAAAGGGTTGTTGCAGCATTATTGGGTGTTTGGACTGGTCCCAATTACTGTGGGGAACTTAGCTGCAAATTGCTTCCTCTGGTTGAATACATAGTAACTCTTGGAAAAGAGCTTGAGAAGAAGCAAGCACTAGGTGCCAGCACTGAAGATATATCTGGTCTTGCTCGTCGGCTGAAAAAGATGTTAGTTGAGTTAAATGAATATGACAAAGCTCGGCGCATATTGAAGACCTTCCAACTGAAAGAAGCTTTGTAG___GTGGTTTTCACATCACAGTTTGGTGCAGTTTCCAGTTGAAAAACCACAATTCTTCCTTCAGACCTTCACAGTAATGTCAGCCCTAATTTTAACTTTCACTTGACTTCCTCTCTTGGGATCTTTTCATGGAAGTCTAATCCTCAAACGACCCAGCCAAATCTTTAGTATGTATTTTGGTCAGGTGAAAACATACAAGTTTCTAAGAGAGAATCGAGAATTAGGGTGGCAACCCAATGTGTATACTCTGTTGGATACTATAAATAATGCCTTAGATTCACAGGTTTTCTGTGCAGTTTTGCATTAGTGACAGATTGTAACATATTTTTCTCCGATCAACACATTTAGACAAGAGCCCTTCTGAGAGAACTGAATGATGCTGGAGTGCGTAGTCAATAACTGCAGCTATGTAACTTGTCTTAATGTACTTTGTCATTCCTTTCGTCATTGTTTGGCATTGATGCCAGTGCAGTTGTAGGTAATTCTTTTCCTTTCTGACAGCGAAAGTGTTTTTAACTTCGTAACACAGAATGAGATGAAGCCATAATGAGGTATGTTGTCTCTACACATATGTTGTCTCTACTACATTAAAGCATTTTCTTAATAACGATGCCGTGAACATTATCAAGGTTACCTTGATAATGTAGGTAAGTTTGTTGTCT

Fln Alignment:

sp_v1.1_unigene4115___AYQSSRDELLQTADQIFSDAAEEFSKLSLVKERFEGWKKLFSSTYRDAYMSLSAPAIFSPYVRLELLKWDPLYEDADLNNMQWHTLLFDYGMPENASDFEPDDADADLVPGLVEKVALPILHHEVAHCWDRLSTKGTKNAVSAVQVILTYIPPSNEALQELLAAVRMRLAEAVAELQVPNWSIPVMNAVSRAARIAAYKFGMSVRLLKNIGLWKGILAMPVLEQLALDELLCGKVLPHLRNIVQNIHDAITRTERVVAALLGVWTGPNYCGELSCKLLPLVEYIVTLGKELEKKQALGASTEDISGLARRLKKMLVELNEYDKARRILKTFQLKEAL
F6HF15______________AYQSNRDLLLQTAEQIFGDAAEEYSQLSAVKERIERWKKQYSSSYRDAYMSLSVPAIFSPYVRLELLKWDPLYEEADFDDMKWHSLLFNYGLSEDGNDFSPDDADANLVPELVERVALPILHHELAHCWDIFSTRETKNAVSATNLVIRYIPASSEALGELLAVVHKRLYKALTNFMVPPWNILVMKAVPNAARVAAYRFGMSIRLMRNICLWKDILALPVLEKLVLDQLLSGQVLPHIENIASDVHDAITRTERIISSLSGVWAGPSVTGERSNKLQPLVDYVLRLGKRLEKRHLPGVTESDTSRLARRLKRMLVELNEYDKARDISRTFHLKEAL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
983	66		33		0.997452
984		66	33		0.997452
985	66		33		0.997452
1292	87		12		0.992554
1315		12		87	0.992554
1398		14		85	0.999981
1402		14		85	0.999981
1408	85		14		0.999981
1409	85		14		0.999981
1410	85	14			0.999981
1412	85		14		0.999981
1415		14	85		0.999981
1416	14	85			0.999981
1419		14		85	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain