SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4097

Length: 1137 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4097 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Boron transporter, putative	-	-	4.0e-37	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	anion exchanger family protein	-	-	1.59846e-39	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bicarbonate transporter, eukaryotic	IPR003020	-	1.59846e-39	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTF7

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 222 - 117

Fln protein: VVTLAVTHFKAIASFTVFQTCYLLVCFGVTWIPIAGVLFPLLIMLLVPARQYVLPKFFKGAHLQELDAAEYEEAAALPYSIAVREAEVHGLGRGSVAGKVDDDEILDEVITRSRGEVKRAYSPRISSSSEAGEVRHPFSPRISGSSQHTESGEAKLASSRWTAETRQAFSPRIAELRHMHSPKINSPRTGERHLQKTFSPRMSNFGEGARTSTSSDCSAGQ*

Protein Length: 223

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAAAGCCATCGCCAGTTTCACAGTTTTCCAGACATGCTATTTGCTGGTATGTTTTGGGGTTACATGGATTCCGATTGCTGGTGTTCTTTTTCCTCTGCTTATAATGCTCCTGGTCCCTGCAAGACAATATGTTCTTCCCAAGTTTTTCAAAGGGGCGCACCTTCAAGAACTGGATGCAGCAGAGTACGAAGAGGCTGCAGCATTGCCATATAGCATAGCAGTAAGGGAAGCTGAAGTTCATGGGCTTGGAAGAGGATCAGTGGCTGGAAAGGTGGATGATGATGAGATTTTAGATGAGGTGATTACACGAAGCCGGGGTGAGGTTAAACGTGCTTATAGTCCAAGAATATCTAGTTCAAGTGAGGCAGGTGAAGTCAGACACCCTTTCAGCCCACGGATTTCTGGCTCAAGTCAACATACAGAGTCTGGAGAAGCTAAACTTGCATCTAGTCGATGGACTGCTGAAACCAGACAAGCATTCAGTCCACGAATTGCTGAACTAAGACACATGCATAGCCCCAAAATTAATAGTCCACGAACTGGCGAAAGACACCTACAGAAAACGTTCAGTCCAAGGATGTCCAACTTTGGGGAGGGGGCAAGGACATCTACGTCCAGTGACTGTTCAGCTGGTCAGTGA___AAGCATGGGGTTGGATTTCACTACGTAGAGCTGTTCACATTTTGATTATTGCACAGGATACAAAATCTGCAATTATTGCAAGTTAGGTAGTAGTTcGATGTTTCATTTGTAAATCCTTTGACCTTTTGTTCTCTCTTCTGTTTCTATGTTTGCTAACCCAGAATAAATAATGGAAGTCCGAGCTTAAAATGAagtGTTTTGTTACACACTATGCAGTCACATATATGCTAGTGGCCTGAGTCTACGTACTAGCGATAGCATCAAATGACTCGATCAATTCAGTTAATGGTGTAATTAAGCAAGAAATCTACCCTCCCAAGTTCCCTCCAATACATGCAAACAACTAAAATAGGCCATAACTACATGTCAGGATAGGTCGTCTAGAAAAATGCAAATCCCTGCCAATGGTCATTATCACCAAGAGTTGGCATGGTTTTCTGTTACCATTTATTAATAAATATTAGTTAAAG

Fln Alignment:

sp_v1.1_unigene4097___VTWIPIAGVLFPLLIMLLVPARQYVLPKFFKGAHLQELDXXXXXXXXALPYSIAVREAEVHGLGRGSVAGKVDDDEILDEVITRSRGEVKRAYSPRISSSSEA---GEVRHPFSP
C0PTF7______________VSLSPIAGVLFPLLIMLLVPARQYILPKFFKGAHLQELDATDYEEAPAMPCNIP--EVGIQGFGLGTIGARVDDGEVLHEMITRSHGEVKHAYSPRITSSSECTPIHESKSAFSP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1019	16		83		0.994512
1021	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain